BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3648.p (240 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 108 3e-25 gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [... 102 2e-23 gi|152980290|ref|YP_001353520.1| hypothetical protein mma_1830 [... 102 3e-23 gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinoba... 99 2e-22 gi|152980124|ref|YP_001353267.1| sensory box protein [Janthinoba... 94 6e-21 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 108 bits (270), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 116/219 (52%), Gaps = 26/219 (11%) Query: 27 DAAAHRAALEELVQHYGQLMRQSRRLISRSDRTERELNLLNTRLKQLSDELDYKARHDNL 86 + AA +A +E+ +Q +L+RQ++ D ER ++ L++ DE + +R D L Sbjct: 398 NEAAEKAIIEQKLQS-NELLRQAK------DDLERIVSERTAELRKARDEAERLSRVDAL 450 Query: 87 TGALNR----------GAVFERAHQILEQSSMSLIVLDIDFFKRINDEFGHPTGDAVIRE 136 TGA NR A R HQ +S+I DID FK+IND +GH GD VI+ Sbjct: 451 TGAFNRRYFNEVAALEFAKVRRLHQ-----PLSVISFDIDLFKQINDNYGHAAGDEVIKA 505 Query: 137 LVGRLRTTLADTGVIGRVGGEEFTILLPDMVLEQAVVLAAKIRQAIAGERFQCL-PARAV 195 R + + + R+GGEEF ILLP +EQA A ++R+ + E+ A Sbjct: 506 AARVSRNAVREIDFVARIGGEEFAILLPGSTIEQAAATAERLRELVIAEQVSYQGKLLAF 565 Query: 196 TSSFGVAWAVAGSD--FEDAYARADQALYQAKRGGRNRV 232 T+SFGVA + SD FE RAD+ +Y+AK GRNRV Sbjct: 566 TASFGVA-QLKDSDQSFEALLQRADEMMYRAKNLGRNRV 603 >gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille] Length = 528 Score = 102 bits (254), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 101/179 (56%), Gaps = 10/179 (5%) Query: 60 ERELNLLNTRLKQLSDELDYKARHDNLTGALNRGA---VFER--AHQILEQSSMSLIVLD 114 E ++ L +L+Q+S+ + R D LTG+LNR V ER A S + + +LD Sbjct: 350 EARIHNLELQLEQMSELV----REDQLTGSLNRRGLDDVLEREIARADRRASPLCIAMLD 405 Query: 115 IDFFKRINDEFGHPTGDAVIRELVGRLRTTLADTGVIGRVGGEEFTILLPDMVLEQAVVL 174 +D FK+IND++GH GD + LV ++ TL VI R GGEEF I+LPD LE+A++ Sbjct: 406 LDDFKKINDKYGHMAGDEALIHLVRVIKDTLRTMDVIARFGGEEFLIVLPDTPLEEAILT 465 Query: 175 AAKIRQAIAGERFQCLPAR-AVTSSFGVAWAVAGSDFEDAYARADQALYQAKRGGRNRV 232 ++++ + + F R +T S GVA D RAD ALY+AK+ G+NRV Sbjct: 466 ITRLQRELTKQIFMHNHTRLLMTFSAGVALRKEREDQAAMVKRADIALYEAKKAGKNRV 524 >gi|152980290|ref|YP_001353520.1| hypothetical protein mma_1830 [Janthinobacterium sp. Marseille] Length = 417 Score = 102 bits (253), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 68/167 (40%), Positives = 95/167 (56%), Gaps = 14/167 (8%) Query: 76 ELDYKARHDNLTGALNRGAVFERA-HQILEQS----SMSLIVLDIDFFKRINDEFGHPTG 130 L+ A HD+LT AL+R + A QIL +SL+++D+D FKRIND +GH G Sbjct: 239 NLEDAANHDHLTEALSRKRLEAVAREQILRAGKFGRPLSLLIIDLDHFKRINDTYGHAGG 298 Query: 131 DAVIRELVGRLRTTLADTGVIGRVGGEEFTILLPDMVLEQAVVLAAKIRQ-----AIAGE 185 D V+RE R +L D +GR+GGEEF ILLP+ A+ +A ++R+ I+G Sbjct: 299 DEVLREFARMTRASLRDGDALGRLGGEEFGILLPNTDTVGALAIARRLREDSERHLISGT 358 Query: 186 RFQCLPARAVTSSFGVAWAVAGSDFEDAYARADQALYQAKRGGRNRV 232 +C + S G+A G +F+ RAD+ALY AK GRNRV Sbjct: 359 FGEC----HYSISIGIATWRDGENFDRLSIRADRALYTAKNSGRNRV 401 >gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 408 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 15/186 (8%) Query: 65 LLNTRLKQLSD----------ELDYKARHDNLTGALNR---GAVFERAHQILEQS--SMS 109 +L +R++QL + +++ AR D L G NR A E+ ++ ++S + Sbjct: 214 VLASRMQQLHNALFKATRKIKDIEEDARRDVLLGCFNRRYIVAALEQQKRMADESGAPLC 273 Query: 110 LIVLDIDFFKRINDEFGHPTGDAVIRELVGRLRTTLADTGVIGRVGGEEFTILLPDMVLE 169 L V+D+D FKR+NDE GH GD V+R + + + GR GGEEF ++LP+ L Sbjct: 274 LAVIDLDHFKRVNDEAGHLGGDEVLRTFARVAESNVRKHDIFGRYGGEEFLLVLPETPLS 333 Query: 170 QAVVLAAKIRQAIAGERFQCLPARAVTSSFGVAWAVAGSDFEDAYARADQALYQAKRGGR 229 A+ ++ +IR I +Q VT S G+ +AG D ++R D A+Y AK+ GR Sbjct: 334 AALNISERIRTQIEQHDWQGKLRNRVTVSIGLTQYIAGESVLDLFSRTDTAMYMAKQSGR 393 Query: 230 NRVESE 235 N+V E Sbjct: 394 NQVVVE 399 >gi|152980124|ref|YP_001353267.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 439 Score = 94.4 bits (233), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 71 KQLSDELDYKARHDNLTGALNRGAVFERAHQIL-----EQSSMSLIVLDIDFFKRINDEF 125 +Q+ L Y A++D LT NR +++R L E+ +SL+ LD+D FK +ND Sbjct: 262 QQMQARLQYMAQYDQLTTLPNRALLYDRLQVALLKARRERGCLSLLFLDLDKFKLVNDTL 321 Query: 126 GHPTGDAVIRELVGRLRTTLADTGVIGRVGGEEFTILLPDMVL-EQAVVLAAKIRQAIAG 184 GH GD +++E+ RL+ L ++ + RVGG+EF ILL + L +QA ++A KIRQA+ Sbjct: 322 GHHVGDQLLQEVARRLKQCLRESDTVARVGGDEFVILLQLIPLPQQAALVAEKIRQALQP 381 Query: 185 ERFQCLPARAVTSSFGVA-WAVAGSDFEDAYARADQALYQAK 225 + S G+A + G D ADQA+YQ K Sbjct: 382 AFNIDKHVLNIVPSIGIAHYPEHGEDEAQLLKHADQAMYQEK 423 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 478,599 Number of extensions: 18463 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 29 Length of query: 240 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 159 Effective length of database: 921,564 Effective search space: 146528676 Effective search space used: 146528676 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)