BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3647.p
         (211 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981398|ref|YP_001354111.1| two-components system response ...    85   3e-18
gi|152981441|ref|YP_001352157.1| two-components system response ...    69   3e-13

>gi|152981398|ref|YP_001354111.1| two-components system response
           regulator [Janthinobacterium sp. Marseille]
          Length = 226

 Score = 85.1 bits (209), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 93/198 (46%), Gaps = 13/198 (6%)

Query: 9   IVGGEDSLGGPLVRLLEAAGFHVAHHPSADQFLQQATGGTPRGLVLEVHMQDVDAPQLRS 68
           IV  + S    L RLL+  G+ V  + S    L    G     ++L+++M       L+ 
Sbjct: 17  IVDDDPSFRRALQRLLQTTGYRVLDYSSVGDMLLSGIGNESGCIILDINMPGPSGLDLQE 76

Query: 69  LLDQRETGRPLIVITGEPSAMMQQEARSNALSTGQHSDMDAGTGKH-EQPMLREQLVAAF 127
           +L       P+I ITGE  A +    R+          M AG      +P+  + L+   
Sbjct: 77  MLVADAHPLPIIFITGE--ATVSDSIRA----------MKAGAADFFCKPLDSQALLCTL 124

Query: 128 RGALMPFDESGPQMQQRQEHHQRLKTLTRREREVLERLVKGRLNKQIAAELGTSERTVKA 187
              L        + ++  +   R  TLT RE+EVL  + +G LNKQI+A+L  +ERTVKA
Sbjct: 125 DKTLKDAACKRKKSKELCDLEARYATLTSREKEVLAMVTRGALNKQISAKLDVAERTVKA 184

Query: 188 HRQQVMRKMNAGSLAALV 205
           HR +VM KM   +LA LV
Sbjct: 185 HRAKVMEKMEVKTLAELV 202


>gi|152981441|ref|YP_001352157.1| two-components system response
           regulator [Janthinobacterium sp. Marseille]
          Length = 197

 Score = 68.6 bits (166), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 23/203 (11%)

Query: 6   LAHIVGGEDSLGGPLVRLLEAAGFHVAHHPSADQFLQ------QATGGTPRGLVLEVHMQ 59
           + HI+  E+ +   L+ L ++ G     + S   FL       +AT    + ++L+V M 
Sbjct: 1   MLHIIDDEEVIRDSLMWLAKSRGIPATAYDSGKAFLTTLDTMPRATSPQGQCILLDVRMP 60

Query: 60  DVDAPQLRSLLDQRETGR--PLIVITGEPSAMMQQEARSNALSTGQHSDMDAGTGKHEQP 117
           +V    L  LL  R   +  P+I +TG     M       A+ T +    D      E+P
Sbjct: 61  EVSGVALFDLLTSRGLTQTFPVIFLTGHGDVPM-------AVDTLKRGAFDF----FEKP 109

Query: 118 MLREQLVAAFRGALMPFDESGPQMQQRQEHHQRLKTLTRREREVLERLVKGRLNKQIAAE 177
               +L+   + AL     S          H RL  L+ REREVL+ +++G++NK IA +
Sbjct: 110 FNDNKLMDRIQEAL----ASSEHASASVAIHTRLAALSGREREVLDLILEGKMNKVIADK 165

Query: 178 LGTSERTVKAHRQQVMRKMNAGS 200
           LG S RTV+ HR  +  KMN  +
Sbjct: 166 LGISMRTVEVHRAHIFDKMNVKT 188


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 452,491
Number of extensions: 17780
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 211
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 132
Effective length of database: 928,958
Effective search space: 122622456
Effective search space used: 122622456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)