BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3646.p (448 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983033|ref|YP_001352592.1| hypothetical protein mma_0902 [... 91 2e-19 gi|152982863|ref|YP_001355300.1| hypothetical protein mma_3610 [... 77 2e-15 gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 67 2e-12 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 61 1e-10 gi|152982572|ref|YP_001351845.1| two-components system response ... 55 8e-09 >gi|152983033|ref|YP_001352592.1| hypothetical protein mma_0902 [Janthinobacterium sp. Marseille] Length = 291 Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 1/184 (0%) Query: 194 EQKAFLAMMQVFSDISELRAGLATGQSARVARWCEQLSLRMGMTSHHAKDAMMAGMLHGI 253 +K L + + + + E R G RV+R+ +L+L +GM+ A + G LH + Sbjct: 18 NRKDLLVSLLIMAWVVEARDPYTGGHLWRVSRFAHRLALELGMSETDAARIAIGGFLHDL 77 Query: 254 GKLDLSDELVRKPIEKMSSEELQRFLWHPVKGQMLLTPIPTLAEAGEIIRHQHERYDGRG 313 GK+ + D+++ K +K+S EE HP G +L P A IR HE DG+G Sbjct: 78 GKVGIPDQILNKK-DKLSEEEYDVIRTHPEIGWRMLANHPLAHIAEHAIRFHHETPDGKG 136 Query: 314 VPESLSGDAIPLGSRILAVVRDFEGLCNGGITSNNVSVEKALAMLRTHANHRYDPLVVET 373 P + G IP+ +RI+ + F+ + + + +EKAL+++ + ++D ++ Sbjct: 137 YPTGIRGTDIPVEARIVGICDAFDAMTSTRPYRKGMPIEKALSIIESELGRQFDSIIGAK 196 Query: 374 FIAM 377 F+A+ Sbjct: 197 FVAL 200 >gi|152982863|ref|YP_001355300.1| hypothetical protein mma_3610 [Janthinobacterium sp. Marseille] Length = 194 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 9/182 (4%) Query: 208 ISELRAGLATGQSARVARWCEQLSLR-------MGMTSHHAKDAMMAGMLHGIGKLDLSD 260 IS G+ G+ +A ++L + +G++ + + +H IGKL +++ Sbjct: 13 ISRFIGGIMRGRDPDLADHLQRLDSKTTQFGRYIGLSETESSLLGIGAGIHDIGKLCINE 72 Query: 261 ELVRKPIEKMSSEELQRFLWHPVKGQMLLTPIPTLAEAGEIIRHQHERYDGRGVPESLSG 320 ++ KP +++S E HP+ G LL P+ + + H HE +DG G P L+G Sbjct: 73 HVLNKP-SRLTSAEFFFIKQHPMAGYQLLAPLELDTRVTDCVLHHHENFDGSGYPHGLAG 131 Query: 321 DAIPLGSRILAVVRDFEGLCNGGITSNNVSVEKALAMLRTHANHRYDPLVVETFIAMMEE 380 + IPL +RI+ + ++ + S +ALA+L YDP ++ +F +MM E Sbjct: 132 ENIPLFARIVRIWDSYDAITMNRPYHKGRSPSEALALLEKDKA-LYDPALLASFSSMMSE 190 Query: 381 QR 382 R Sbjct: 191 SR 192 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 25 VLLVDDEQSILSALKRTFRPQGYQLLTATSAEAGLDILASAEVDLVISDMRMPGMNGAQF 84 + +VDD++SI L++ + + ++A L+ L + +++SD+RMPG +G + Sbjct: 4 IWIVDDDESIRWVLEKALARENLATKSFSNARDALEALKTGAPQVLVSDIRMPGESGLEL 63 Query: 85 LAQVRQRWPATMRILLTGYSEIGSTISAINDGGINHYLAKPWDDRELLMTVTHALEE 141 L V+ + P I++T +S++ S ++A GG YLAKP+D + + ALEE Sbjct: 64 LQAVKAKHPGLPVIIITAFSDLDSAVAAFQ-GGAFEYLAKPFDIDHAVGLIRRALEE 119 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 69/131 (52%), Gaps = 1/131 (0%) Query: 25 VLLVDDEQSILSALKRTFRPQGYQLLTATSAEAGLDILASAEVDLVISDMRMPGMNGAQF 84 +L+VDDE + S L+RT + ++ S EA +L DL+I D +PG +G + Sbjct: 45 ILIVDDEPGMRSFLQRTLVGRCSRVEAVDSVEAANVLLGQQHFDLIILDNSLPGKSGVDW 104 Query: 85 LAQVRQRWPATMRILLTGYSEIGSTISAINDGGINHYLAKPWDDRELLMTVTHALEEQQL 144 L ++R+ +L+T ++++ + I A+ G + +L KP+ ++L + + L Sbjct: 105 LQEIRELGLHNDVVLITAFADLETAIRALRAGAAD-FLLKPFRVNQILSAIGRCFDRAHL 163 Query: 145 RKQKMALERKV 155 R++ L R++ Sbjct: 164 RRENFILRREL 174 >gi|152982572|ref|YP_001351845.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 238 Score = 55.1 bits (131), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 25 VLLVDDEQSILSALKRTFRPQGYQLLTATSAEAGLDILASAEVDLVISDMRMPGMNGAQF 84 +L+VDDE I L +G+ + TA +A+ ++ A+A+ DLV+ D+ MP +G Sbjct: 4 ILVVDDEMGIRELLSEILGDEGHVVATAENAQQARELRAAAKPDLVLLDIWMPDTDGVTL 63 Query: 85 LAQVRQRWPATMR-ILLTGYSEIGSTISAINDGGINHYLAKPWDDRELLMTVTHALEEQQ 143 L + ++ TM I+++G++ I + + A G +N +L KP ++LL V L Q Sbjct: 64 LKEWQRDGMLTMPVIMMSGHATIDTAVEATRIGALN-FLEKPISLQKLLKAVQQGLTRGQ 122 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 944,529 Number of extensions: 37572 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 8 Length of query: 448 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 362 Effective length of database: 903,079 Effective search space: 326914598 Effective search space used: 326914598 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)