BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3645.p (453 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982390|ref|YP_001355364.1| signal transduction histidine k... 130 2e-31 gi|152982047|ref|YP_001352158.1| signal transduction histidine k... 93 4e-20 gi|152982019|ref|YP_001352553.1| serine/threonine kinase protein... 89 8e-19 gi|152982333|ref|YP_001354112.1| two-component sensor histidine ... 86 5e-18 gi|152981064|ref|YP_001351846.1| two component sensor histidine ... 73 4e-14 >gi|152982390|ref|YP_001355364.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 671 Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 148/296 (50%), Gaps = 51/296 (17%) Query: 150 KQLEDALQCQAEEQRALIEQ----LKMAQAQLLQSEKLASIGQLAAGVAHEINNPIGFVN 205 K + L + E+ A +EQ L AQ QL+ +EKLA+IG++ AGVAHEINNP+ + Sbjct: 412 KSWGNELDRKVVERTAELEQTNKLLVQAQQQLVLAEKLAAIGEITAGVAHEINNPVAVLQ 471 Query: 206 ANLNTLGNYVATLLEGIKLYQCVAGGKLPSSVAQSELQSFEDRADLQFLSEDVTELLSES 265 NL+ L + + + Q ELQ + + Sbjct: 472 GNLDVLRDTLGA----------------AAKPVQGELQLMDQQ----------------- 498 Query: 266 NEGLQRVKNIVQSLKDFSRTGE--SNWQMADLHRGLDSTLNIANNEL-KYKVNIV-KQYG 321 + R+ IV L F+ GE + + + +L + + L + ++ +V K+ Sbjct: 499 ---IYRINTIVTKLLQFASPGEFAGYVETVVIDEIVADSLVLVRHLLNQSRIAVVHKKEA 555 Query: 322 ELPMVKCLASELNQVFMNLLVNAAQAISERGSVTIRT----ERHGDR-VAVSISDTGHGI 376 LP V EL QV +NL NA A+ + GS+TI T E G R VA+S++DTG GI Sbjct: 556 TLP-VSINRGELQQVLINLFTNAIHAMKDGGSLTISTSDWQEADGKRGVAISVADTGSGI 614 Query: 377 APEHINRIFEPFFTTKPVGSGTGLGLSLSYGIIKKHGGDIHVCSEPGQGTTFRIEL 432 E I IF+ FFTTK G GTGLGLS+SY ++ ++GG I V SE G GT F + L Sbjct: 615 RKEDIAHIFDAFFTTKRQG-GTGLGLSISYTLVARYGGTITVRSEEGAGTEFTVRL 669 >gi|152982047|ref|YP_001352158.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 678 Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 106/391 (27%), Positives = 172/391 (43%), Gaps = 58/391 (14%) Query: 55 RLTFVSENASRVLGYEPQEM---LDDPNFWFNHIHPDDTANIFSSLAMLFVEDQKIYEYR 111 R+T+V+ S+++G +E+ L +W + + FS +A Q +E Sbjct: 318 RVTYVNPAFSQMVGMPAEEIVGHLPPMPYWAPEARTEYHRH-FSQVAAGTANPQG-FETV 375 Query: 112 FRTRDGSYLWMHDTLRLIRDASGTPLEVIGLMTDITGRKQLEDALQCQAEEQRALIEQLK 171 F+ DG + + + D +G +G + DI+ RK++ED L Q EE+ Sbjct: 376 FQHSDGRRIPVLIFESPLVDNTGAQTGWMGSILDISDRKRVED-LNRQQEEK-------- 426 Query: 172 MAQAQLLQSEKLASIGQLAAGVAHEINNPIGFVNANLNTLGNYVATLLEGIKLYQCVAGG 231 L S +LA++G++A+ +AHE+N P+ +++ Y L ++ + A Sbjct: 427 -----LQASARLATMGEIASTLAHELNQPLAAISS-------YTTGALNMLERDKSKAA- 473 Query: 232 KLPSSVAQSELQSFEDRADLQFLSEDVTELLSESNEGLQRVKNIVQSLKDFSRTGESNWQ 291 E D+ +T L ++ QR I++S+ F + E Sbjct: 474 --------------EVNIDM------LTHALEKAQAQAQRAGQIIRSVHTFVKKREPMRT 513 Query: 292 MADLHRGLDSTLNIANNEL-KYKVNI-VKQYGELPMVKCLASELNQVFMNLLVNAAQAIS 349 + +D+ + + KY V I + LP V L QV +NL NA +++ Sbjct: 514 AVTIEELIDNVAPLVELQAQKYFVFIKIDIPDNLPAVLADHVLLEQVLLNLTRNAIESMQ 573 Query: 350 ----ERGSVTIRT---ERHGDRVAVSISDTGHGIAPEHINRIFEPFFTTKPVGSGTGLGL 402 E+ + I E V VSISD GHGI PE R++ PFF+TK G G+GL Sbjct: 574 SIAPEKRVLRIAAAIDESDPPNVVVSISDQGHGIPPEVAERLYSPFFSTK--ADGMGMGL 631 Query: 403 SLSYGIIKKHGGDIHVCSEPGQGTTFRIELP 433 S+ I+ HGG + PG GT FR LP Sbjct: 632 SICRTAIEFHGGTLTHADNPGGGTIFRFSLP 662 >gi|152982019|ref|YP_001352553.1| serine/threonine kinase protein [Janthinobacterium sp. Marseille] Length = 1667 Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 95/334 (28%), Positives = 157/334 (47%), Gaps = 48/334 (14%) Query: 124 DTLRLIRDASGTPLEVIGLMTDITGRKQLE-DALQCQAEEQRALIEQLKMAQAQLLQSEK 182 + L+++ LE GL D+ + + AL + E + L+ Q QL++S K Sbjct: 1344 ELLQILSTQIAISLENAGLYNDLEQKIEARTQALIQKNTELHDTLNSLRRTQKQLVESAK 1403 Query: 183 LASIGQLAAGVAHEINNPIGFVNANLNTLGNYVATLLEGIKLYQCVAGGKLPSSVAQSEL 242 LAS+GQL AGVAHEIN P+G +TL A L L+Q ++ +S+L Sbjct: 1404 LASLGQLVAGVAHEINTPLGVGVTGASTLAEETARLK---SLFQS-------GAMKRSDL 1453 Query: 243 QSFEDRADLQFLSEDVTELLSESNEGLQRVKNIVQSLKDFS--RTGESNWQMADLHRGLD 300 ++ A +++LL + ++R ++QS KD + +T E + L +D Sbjct: 1454 DAYVGTAG------TISKLLLSN---MERAATLIQSFKDVAVDQTSEER-RTFRLKAYID 1503 Query: 301 STL-NIANNELKYKVNIVKQYGELPMVKCLASELNQVFMNLLVNA--------------- 344 L N++ + + + E V L+QV NL++N+ Sbjct: 1504 EILSNLSPMLRRSEHRVAVDCDEAIEVDTYPGALSQVITNLVMNSLLHAFTDHVPGEILI 1563 Query: 345 -AQAISERGSVTIRTERHGDRVAVSISDTGHGIAPEHINRIFEPFFTTKPVGSGTGLGLS 403 +++ E+G T D + +S+SD G GI E++ +IF+PFFTT G+GLGL+ Sbjct: 1564 VVRSVYEQGQET-------DMIELSLSDNGQGIPQENLAKIFDPFFTTTRGRGGSGLGLN 1616 Query: 404 LSYGIIKKH-GGDIHVCSEPGQGTTFRIELPIDP 436 + + ++ G I V S+ G GTTF + P P Sbjct: 1617 IVHNLVTSSLQGQIAVESQLGVGTTFILRFPRSP 1650 >gi|152982333|ref|YP_001354112.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 587 Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 42/286 (14%) Query: 156 LQCQAEEQRALIEQLKMAQAQLLQSEKLASIGQLAAGVAHEINNPIGFVNANLNTLGNYV 215 Q Q +++ E+ + L +L S+G+L A + HEIN P+G + AN + Sbjct: 330 FQWQRKKRLRADEEANRQRTALAHVARLGSVGELTASIVHEINQPLGAILANADA----- 384 Query: 216 ATLLEGIKLYQCVAGGKLPSSVAQSELQSFEDRADLQFLSEDVTELLSESNEGLQRVKNI 275 AT++ L Q QS D ++ +L++ + R I Sbjct: 385 ATMM----LNQ----------------QSHPD--------HELRAILADIRDDNLRASLI 416 Query: 276 VQSLKDFSRTGESNWQMADLHRGLDSTLNIANN-ELKYKVNIVKQYG-ELPMVKCLASEL 333 +Q L+ + L+ +D++ ++ N +K+ V + + +LPM+ ++ L Sbjct: 417 IQKLRVLLSKRSLESKPVSLNEVIDTSRSLLGNLAIKHHVMMAIELAPDLPMIMGDSTHL 476 Query: 334 NQVFMNLLVNAAQAISE----RGSVTIRTER-HGDRVAVSISDTGHGIAPEHINRIFEPF 388 QV +NL NA +A+ + +++I+TE+ + + + ++D G GI + IFE F Sbjct: 477 QQVLINLASNAMEAMEAVPPAQRTLSIKTEQCNASHIRLIVADKGPGIPTNILPNIFESF 536 Query: 389 FTTKPVGSGTGLGLSLSYGIIKKHGGDIHVCSEPGQGTTFRIELPI 434 +TTKP G G+GL++ I+ H G I ++P G F I PI Sbjct: 537 YTTKP--EGMGMGLAIVQTIVDAHCGLIETFNDPAGGAAFVITFPI 580 >gi|152981064|ref|YP_001351846.1| two component sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 763 Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 48/257 (18%) Query: 177 LLQSEKLASIGQLAAGVAHEINNPIGFVNANLNTLGNYVATLLEGIKLYQCVAGGKLPSS 236 ++ +++ + G++A +AHEI NP+ + L +L+ + G KL Sbjct: 519 VISAQRSIAWGEVARRLAHEIKNPLTPIQ-------------LSAERLHMKLEG-KL--- 561 Query: 237 VAQSELQSFEDRADLQFLSEDVTELLSESNEGLQRVKNIVQSLKDFSRTGESNWQMADLH 296 + AD + L ++++ + +K +V +D+++T + DL+ Sbjct: 562 ----------NEADAKVLERSTETIVNQ----VTAMKRMVDDFRDYAKTPPAVLSSLDLN 607 Query: 297 RGLDSTLNIANNELKYKVNIVKQYGELPMVKCLASELNQVFMNLLVNAAQAISERGS--- 353 ++ L++ + + +LP++ ++L QV NLL NA A+++RG Sbjct: 608 ALIEEILHLYLSGDGRDIIHATLAQDLPLIMGDPTQLRQVIHNLLQNAQDAVADRGEQAA 667 Query: 354 ---VTIRTE----RHGD-----RVAVSISDTGHGIAPEHINRIFEPFFTTKPVGSGTGLG 401 + I TE R D V ++I+D G G P+ + FEP+ T+KP GTGLG Sbjct: 668 PARIDIITEEIHYRSSDGAVSNAVQLTITDNGPGFTPKILAHAFEPYITSKP--RGTGLG 725 Query: 402 LSLSYGIIKKHGGDIHV 418 L++ II++HGG I + Sbjct: 726 LAMVKKIIEEHGGRIDI 742 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 990,372 Number of extensions: 38741 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 219 Number of HSP's successfully gapped: 22 Length of query: 453 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 367 Effective length of database: 903,079 Effective search space: 331429993 Effective search space used: 331429993 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)