BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3643.p (544 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 181 7e-47 gi|152981134|ref|YP_001352907.1| signal transduction protein [Ja... 179 3e-46 gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinoba... 173 3e-44 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 173 3e-44 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 166 2e-42 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 181 bits (460), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 99/257 (38%), Positives = 153/257 (59%), Gaps = 16/257 (6%) Query: 266 RLSPLAELQLAVRKREFIVCYQPIIELDSGRCVGAEALIRWKRPDGSIVRPDLFIPLAEE 325 RL L L+ A+ +F++ YQP + L S + +GAEAL+RW +V P FIPLAEE Sbjct: 447 RLELLNRLRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNSAHSGMVSPASFIPLAEE 506 Query: 326 SGLILPLTDLVIETVVAELGAILRADRA--------LHVAINVAAQDIKTGRILEVVGKN 377 +GLI+PL + V+ T R +RA + +++N++ + + G I+EVV + Sbjct: 507 TGLIIPLGEWVLRTAC-------RQNRAWQDAGYPPIPISVNLSPRQLARGDIVEVVERI 559 Query: 378 LAGTDIRTEQIWMEATER-GCMDIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLP 436 L T + + + +E TE D+ + L + R LG ++LDDFGTGYS+L YL+ P Sbjct: 560 LTETGLEAQHLELEITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYLKRFP 619 Query: 437 MDALKIDKSFVSTIGTGAATSAVIDHIIAMAKSLNLYIVAEGVETLEQAAYLSQQEVDFV 496 +D LKID+SFV I T ++A++ II++ ++LNL ++AEG+ET +Q +L D Sbjct: 620 VDTLKIDQSFVRDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANGCDEG 679 Query: 497 QGWLFAKPMPAGEFVDF 513 QG+L +KP+P FVD Sbjct: 680 QGYLMSKPVPNKNFVDL 696 >gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 898 Score = 179 bits (454), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 101/254 (39%), Positives = 150/254 (59%), Gaps = 2/254 (0%) Query: 264 QARLSPLAELQLAVRKREFIVCYQPIIELDSGRCVGAEALIRWKRPDGSIVRPDLFIPLA 323 + RL+ ELQ A+++ +F++ YQP ++ +G+ +G EALIRW+ P +V P+ FI LA Sbjct: 639 KMRLNTEQELQQAIKEDQFLIYYQPRVQTQTGKLLGIEALIRWQHPTRGLVLPNDFIGLA 698 Query: 324 EESGLILPLTDLVIETVVAELGAILRAD-RALHVAINVAAQDIKTGRILEVVGKNLAGTD 382 EESGLI P+ +LV++ V A+L + L+ A+ V++NV+ G++ + + +LA Sbjct: 699 EESGLINPIGELVVDKVCAQLASWLKQGVEAVPVSVNVSPHQFNEGKVKKSIAASLAKHG 758 Query: 383 IRTEQIWMEATERGCM-DIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLPMDALK 441 I + +E TE M +I L +G + +DDFGTGYS+L LQ L MD LK Sbjct: 759 IPASLLEIELTESAMMRNIGDIFDELTAINAMGIKVHVDDFGTGYSSLSLLQRLDMDILK 818 Query: 442 IDKSFVSTIGTGAATSAVIDHIIAMAKSLNLYIVAEGVETLEQAAYLSQQEVDFVQGWLF 501 ID++F S +G G I++MAK+L + +VAEGVETLEQ L D VQG+ Sbjct: 819 IDQAFTSQLGRGKDGEIFFTAIVSMAKALGMRVVAEGVETLEQLHILQTLSCDEVQGYYV 878 Query: 502 AKPMPAGEFVDFYR 515 A P+PA D R Sbjct: 879 AWPLPADNIADIIR 892 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 173 bits (438), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 139/240 (57%), Gaps = 2/240 (0%) Query: 272 ELQLAVRKREFIVCYQPIIELDSGRCVGAEALIRWKRPDGSIVRPDLFIPLAEESGLILP 331 +L A+++ FIV YQP +E +GR VG EAL+RW P+ ++ PD FIPLAE +G+ILP Sbjct: 660 QLARAIQEDHFIVYYQPRVEAQTGRMVGMEALVRWAHPERGLIAPDHFIPLAESTGMILP 719 Query: 332 LTDLVIETVVAELGAILRADRAL-HVAINVAAQDIKTGRILEVVGKNLAGTDIRTEQIWM 390 L LV+E V ++ A A+ V++NV+A+ G + E + L + I + Sbjct: 720 LGRLVMEKVFCQIAAWQFQKLAVVPVSVNVSARQFDEGNVSEFIASCLNKYAVDPRFIEI 779 Query: 391 EATERGCM-DIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLPMDALKIDKSFVST 449 E TE M + R ++ LG + +DDFGTGYS+L L MD LK+D++F S Sbjct: 780 ELTESAMMGNFEQVRGEISSISALGIQIHVDDFGTGYSSLSLLYKFNMDVLKVDRAFTSQ 839 Query: 450 IGTGAATSAVIDHIIAMAKSLNLYIVAEGVETLEQAAYLSQQEVDFVQGWLFAKPMPAGE 509 I G I++MAK L + +VAEGVET+EQ L Q D +QG+L +KP+P+ + Sbjct: 840 ICNGKGGEIFFSSIVSMAKVLKMRVVAEGVETIEQLRVLQQLGCDEIQGYLVSKPIPSSD 899 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 173 bits (438), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 152/251 (60%), Gaps = 16/251 (6%) Query: 266 RLSPLAELQLAVRKREFIVCYQPIIELDSGRCVGAEALIRWKRPDGSIVRPDLFIPLAEE 325 RL +L+ A+ + EFI+ YQP ++L +G+ VG EALIRW+ P+ ++ P FI LAEE Sbjct: 691 RLRLEGDLRNAMERGEFILHYQPQLDLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAEE 750 Query: 326 SGLILPLTDLVIETVVAE--------LGAILRADRALHVAINVAAQDIKTGRILEVVGKN 377 +GLI+P+ VI + LG+ L +++N++A+ +LE + Sbjct: 751 TGLIVPIGAWVIREACRQNKVWQEHGLGS-------LRMSVNLSARQFAQQDLLESIALA 803 Query: 378 LAGTDIRTEQIWMEATERGCM-DIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLP 436 L T + + + +E TE M D+ A L + LG +++DDFGTGYS+L YL+ P Sbjct: 804 LEETQLPPQCLEIELTESLVMADVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFP 863 Query: 437 MDALKIDKSFVSTIGTGAATSAVIDHIIAMAKSLNLYIVAEGVETLEQAAYLSQQEVDFV 496 +D LKID+SFV+ I T +A++ II++A SL L ++AEGVET EQ AYL Q + D + Sbjct: 864 IDVLKIDRSFVNDITTDPDDAAIVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDCDQI 923 Query: 497 QGWLFAKPMPA 507 QG+ F++P+ A Sbjct: 924 QGYFFSRPITA 934 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 143/247 (57%), Gaps = 2/247 (0%) Query: 266 RLSPLAELQLAVRKREFIVCYQPIIELDSGRCVGAEALIRWKRPDGSIVRPDLFIPLAEE 325 RL EL+ A+ E ++ YQP ++L +G VG EAL+RW P +V+P FI LAEE Sbjct: 650 RLRIEGELRHAIELNELVLHYQPQVDLHTGAIVGLEALVRWNHPILGMVQPGSFISLAEE 709 Query: 326 SGLILPLTDLVIETVVAELGAILRAD-RALHVAINVAAQDIKTGRILEVVGKNLAGTDIR 384 +GLI+P+ V++T + A L +A+N++A+ +LE + L T + Sbjct: 710 TGLIIPIGAWVLQTACRQAKAWQDMGFTQLRIAVNLSARQFTQASLLESIKDTLQETGLE 769 Query: 385 TEQIWMEATERGCM-DIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLPMDALKID 443 + +E TE M DI +TL + LG +++DDFGTG+S+L YL+ P+D LKID Sbjct: 770 ARFLEIELTESSVMADIERNILTLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTLKID 829 Query: 444 KSFVSTIGTGAATSAVIDHIIAMAKSLNLYIVAEGVETLEQAAYLSQQEVDFVQGWLFAK 503 +SFV I ++++ II++A +L L ++AEGVET Q L Q + +QG+ F K Sbjct: 830 RSFVRDIAINQDDASIVSSIISLAHNLKLNVIAEGVETASQMDILRAQGCNEIQGYYFCK 889 Query: 504 PMPAGEF 510 P+P+ + Sbjct: 890 PLPSDQI 896 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,150,932 Number of extensions: 45322 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 15 Length of query: 544 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 456 Effective length of database: 895,685 Effective search space: 408432360 Effective search space used: 408432360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)