BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3641.p
         (320 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and...    64   9e-12
gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY [Janthi...    61   1e-10
gi|152982727|ref|YP_001353936.1| chemotaxis related protein [Jan...    58   7e-10

>gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and
            regulator [Janthinobacterium sp. Marseille]
          Length = 1901

 Score = 64.3 bits (155), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 13/120 (10%)

Query: 185  LKPGSVVLAADDSRMARALIEQCLKDLNLPYMMTTDGLQAWKKLQELARQAEQEGKPLTD 244
            L+  S+V+  DDS   R + ++ L       ++  DG+ A + LQ +             
Sbjct: 1773 LRTQSIVMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPD---------- 1822

Query: 245  KVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANGYVAK 304
               ++L D+EMP MDGF LTR I+  ++ + +P+++ +S T S + ++   +G N Y+ K
Sbjct: 1823 ---VMLVDIEMPRMDGFDLTRNIRDDERTRDIPIIMITSRTASKHRNYAMELGVNEYLGK 1879


>gi|152982726|ref|YP_001353786.1| chemotaxis protein CheY
           [Janthinobacterium sp. Marseille]
          Length = 121

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 18/131 (13%)

Query: 191 VLAADDSRMARALIEQCLKDLNLPYMMTTDGLQAWKKLQELARQAEQEG--KPLTDKVAM 248
           +LA DDS   R ++   L+          DG               Q+G  K  T    +
Sbjct: 5   ILAVDDSGSLRQMVVFSLRAAGYQVTEAVDG---------------QDGLDKAKTQVFDL 49

Query: 249 VLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANGYVAK-FSP 307
           VLTD  MP MDGF+L R ++A   Y+++P+++ ++ +    +   R+ GANG++ K F P
Sbjct: 50  VLTDQNMPRMDGFSLIRALRALSTYQKIPILVLTTESSDEMKAKGRAAGANGWLVKPFDP 109

Query: 308 PELAAMLRKVL 318
             L  +++KV+
Sbjct: 110 QRLTEVVKKVI 120


>gi|152982727|ref|YP_001353936.1| chemotaxis related protein
           [Janthinobacterium sp. Marseille]
          Length = 391

 Score = 58.2 bits (139), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 19/125 (15%)

Query: 183 LKLKPGSVVLAADDSRMARALIEQCLKDLNLPYMMTTDGLQAWKKLQELARQAEQEGKPL 242
           + LKP   +L ADDSR+ RA + + ++ +   +    DG QAW+ L             L
Sbjct: 9   ISLKPR--ILIADDSRIVRATLIKHIEGM-FEFREALDGEQAWEAL-------------L 52

Query: 243 TD-KVAMVLTDLEMPEMDGFTLTRKIKAS--DQYKQLPVVIHSSLTGSANEDHVRSVGAN 299
            D  + +V++DL MP++DG+ L ++I+AS   + + +PVV+ S     A  D  ++ GA 
Sbjct: 53  IDPSIRVVISDLTMPKLDGYGLLKRIRASKISRIRNMPVVVVSGSDEQAERDRAKAAGAT 112

Query: 300 GYVAK 304
             + K
Sbjct: 113 DLITK 117


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 724,367
Number of extensions: 29107
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 4
Length of query: 320
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 237
Effective length of database: 914,170
Effective search space: 216658290
Effective search space used: 216658290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)