BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3640.p (579 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 445 e-126 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 442 e-125 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 421 e-119 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 421 e-119 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 418 e-118 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 445 bits (1144), Expect = e-126, Method: Compositional matrix adjust. Identities = 278/587 (47%), Positives = 383/587 (65%), Gaps = 36/587 (6%) Query: 6 DLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSA----------TDIARNWLPSINS 55 +LKI+ +L+ F ++L +V + + IL+L +V SA +A+ WL +++ Sbjct: 5 NLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAVDV 64 Query: 56 LSKISLALARSRSFDMQQLLTDDKKEEQASRERASKQMEILLKEMSIYGSLVSEPREKEL 115 +LA A++ S + Q Q ++ S + L KE+ S++ P +K L Sbjct: 65 NGARTLASAKTTSAEDQAFF-------QKQMDKTSVRANELQKEIE---SMIKTPEDKRL 114 Query: 116 FLEIQHNVADYKSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINEATEINRKGA 175 F E+ Y+ + + +L A+GK EA +++ + I+ + +K Sbjct: 115 FEELVVARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLI 174 Query: 176 MDSDDQANQVYQQARLAIVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGDLR 235 ++ + R ++GL+A+ +AL + +W +A + RPL AV +AR VA+GDL Sbjct: 175 DEAGTSIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLS 234 Query: 236 AHIAANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRTEQ 295 A I +S DETGQL+ AL+ M +L V EVR GT+TI+TAS +IA+GN++LSSRTE+ Sbjct: 235 AKIEV-SSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEE 293 Query: 296 QAGALEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAINDS 355 QA +L ETA++M +LTSTVRQN+DNARQAN LA+SAS+VA GG VV +VV TM +IN+S Sbjct: 294 QASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINES 353 Query: 356 SRRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREI 415 +R+IVDII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA+EI Sbjct: 354 ARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEI 413 Query: 416 KTLIDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINNAV 475 K LI DSV KVEAGSKLV+EAG TMNE+V SVKRV+DI+AEI AAS EQ+ GI+Q+N A+ Sbjct: 414 KILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAI 473 Query: 476 AQMDENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLDASQAPLVSNTANTAAAHNK 535 QMD+ TQQNAALVE+AAAAA++LQ+QA L++ VS F LD +Q VS+ + Sbjct: 474 GQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLDGNQPAFVSSLDDI-----P 528 Query: 536 AARNVLPRHPAVAATRTKIIARPAQAAP---SKRQHDSADHGDWEQF 579 RN P A RT+ A+P + P KR+ +A DWE+F Sbjct: 529 VVRNTTP------AIRTQ-AAKPLLSNPVHAPKREKATAGADDWEEF 568 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 442 bits (1137), Expect = e-125, Method: Compositional matrix adjust. Identities = 290/596 (48%), Positives = 378/596 (63%), Gaps = 47/596 (7%) Query: 1 MKWFYDLKIAHKLNAAFLVVLLFLVGLGGMSILQL---AQVNQSATD--IARNWLPS-IN 54 M +F ++KI +L F VVL + + I QL + + +S + IA+ + S Sbjct: 1 MIFFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWA 60 Query: 55 SLSKISLA----LARSRSFDMQQL----LTDDKKEEQASRERASKQMEILLKEMSIYGSL 106 +++K S+A +A+S + Q DD K+ MEI+ K L Sbjct: 61 AITKASIARTIGVAKSADPALAQFSAKFAADDSKQS----------MEIIQK----LEPL 106 Query: 107 VSEPREKELFLEIQHNVADYKSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINE 166 ++ +EKEL+ +I + + E + +L +GK+ EA T+ ++ E Sbjct: 107 LNTDQEKELYAKILDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTE 166 Query: 167 ATEINRKGAMDSDD-QANQVYQQARLAIVGLIASCMALALLMSWWIARLVARPLTHAVDI 225 E+ RK MD+ Q + V + ++ L A +A + +W + + RPL AVD Sbjct: 167 FVELERK-QMDAGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDA 225 Query: 226 ARQVAAGDLRAHIAANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATG 285 AR+VA GDL I A SKDE GQLL AL+ MND L+ IV EVR+GT+TI+TAS EIA G Sbjct: 226 ARRVAGGDLTNDIKAE-SKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAG 284 Query: 286 NMNLSSRTEQQAGALEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKV 345 N++LSSRTEQQA +LEETAS+MEELTSTV+QN+DNARQANQLAVSASEVA GG VV +V Sbjct: 285 NLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQV 344 Query: 346 VHTMGAINDSSRRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 405 V TM +IN+SSR+IVDII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLA Sbjct: 345 VQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLA 404 Query: 406 QRSASAAREIKTLIDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQT 465 QRSASAA+EIK LI DSV KV+ G+KLV EAG TM+E+V S++RV+DI+ EITAAS EQ+ Sbjct: 405 QRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQS 464 Query: 466 QGIEQINNAVAQMDENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLDASQAPLVSN 525 GIEQIN A+ QMD TQQNA+LVE+AAAAA+++Q+QA +L Q V F LD Sbjct: 465 AGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLD--------- 515 Query: 526 TANTAAAHNKAARNVLPRHPAVAATRTKI-IARPAQAAPSKRQHDSADHGD-WEQF 579 N A+ A V P AA + +A P P +R + + GD WEQF Sbjct: 516 --NAQEANPPRASGVTRLAPKPAAGSAGLAVAAP---LPQRRANGALPAGDEWEQF 566 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 421 bits (1083), Expect = e-119, Method: Compositional matrix adjust. Identities = 266/532 (50%), Positives = 349/532 (65%), Gaps = 33/532 (6%) Query: 1 MKWFYDLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSATDIARNWLPSI---NSL- 56 MK ++KI KL +F VV LV + +S +QL Q+N S I+++ P NS+ Sbjct: 1 MKMIANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQ 60 Query: 57 ---SKISLAL----ARSRSFDMQQLLTDDKKEEQASRERASKQMEILLKEMSIYGSLVSE 109 +KI+L L S ++QL++D QAS ++ ++ +E L V++ Sbjct: 61 IEVNKIALNLRDIMLSSDPAKIKQLVSD----TQASDKKMNEGLEQL--------RAVAQ 108 Query: 110 PREKELFLEIQHNVAD-YKSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINEAT 168 E ++ D Y A + + QL GK EA L V+ +Q + A Sbjct: 109 TEEDNRYVSAAIVARDQYVPARDTLLQLAQDGKTAEAKTYLDQ----VFMPVQVKYFIAL 164 Query: 169 E--INRKGAMD--SDDQANQVYQQARLAIVGLIASCMALALLMSWWIARLVARPLTHAVD 224 + + +G++ + D A+ QAR I L + L++ + WW+ R + RPL AV Sbjct: 165 DAMFDYQGSLMNVAGDAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVG 224 Query: 225 IARQVAAGDLRAHIAANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIAT 284 +AR+VA GDL + T+ +E GQL+ AL+ MNDNL IV +VR GT TI+ AS EIA Sbjct: 225 VARRVAQGDLSGPVFVKTT-NEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIAR 283 Query: 285 GNMNLSSRTEQQAGALEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGK 344 GNM+LSSRTEQQA +LEETASAMEELTSTVR+N+DNA+QANQLA SA++VA+ GG VV + Sbjct: 284 GNMDLSSRTEQQASSLEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHE 343 Query: 345 VVHTMGAINDSSRRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 404 V+ TM AIN SS++I DI VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+L Sbjct: 344 VIATMAAINTSSKKIADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNL 403 Query: 405 AQRSASAAREIKTLIDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQ 464 AQRSA+AA EIK LIDDSV KV+ GSKLV +AG T++EVV SV +S IVA I+ AS EQ Sbjct: 404 AQRSATAAMEIKALIDDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQ 463 Query: 465 TQGIEQINNAVAQMDENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLD 516 + GIEQ+ A+ Q+DE TQQNAALVEQ+AAAA++L+EQA +L Q VS+F LD Sbjct: 464 SAGIEQVGQAIVQIDEGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKLD 515 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 421 bits (1081), Expect = e-119, Method: Compositional matrix adjust. Identities = 288/601 (47%), Positives = 375/601 (62%), Gaps = 59/601 (9%) Query: 6 DLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSATDIARNWLPSINSLSKISLALAR 65 +LKI +L+ +F +++ LV L ++ ++ +N + +++ + P LA Sbjct: 3 NLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKT--------VLAN 54 Query: 66 SRSFDMQQ--------LLTDDKKEEQASRERASKQMEILLKEMSIYGSLVSEPREKELFL 117 D+ Q LL +K QA + K + L + V R ++ Sbjct: 55 VMKDDLNQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIA 114 Query: 118 EIQHNVADYKSAHERMEQLFAQGKKQEAHAVLST---SSTVVYRKLQDQ-INEATEINRK 173 +Q + + + + +L + G K EA A+L + + Y D+ I+ E+ +K Sbjct: 115 GLQADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKK 174 Query: 174 GAMDSDDQANQVYQQARLAIVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGD 233 +++ +A+Q Q + I +IA + +A + + R + RPL+ AV +AR+VA GD Sbjct: 175 SGAEANAKASQT--QLLIGIFSIIA--VLIAAVFAVLATRSITRPLSQAVVLARKVADGD 230 Query: 234 LRAHIAANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRT 293 L I SKDETGQLL AL+ MN+ L IV +VR+GTDTI++AS +IATGN++LSSRT Sbjct: 231 LTGSIVVE-SKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRT 289 Query: 294 EQQAGALEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAIN 353 EQQA +LEETAS+MEELTSTV+QN++NARQ+NQLA+SASEVA GG VV KVV TMG IN Sbjct: 290 EQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEIN 349 Query: 354 DSSRRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAR 413 DS+++IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAA+ Sbjct: 350 DSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAK 409 Query: 414 EIKTLIDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINN 473 EIK LI DSV KV GS+LVD+AG TM EVV SVKRV+DI++EITAAS EQT GIEQIN Sbjct: 410 EIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQ 469 Query: 474 AVAQMDENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLDASQAPLVSNTANTAAAH 533 AV QMD+ TQQNAALVE+AAAAA++LQ QA+ LSQ V VF LD +V N T A Sbjct: 470 AVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVV-NAVPTYTA- 527 Query: 534 NKAARNVLPRHPAVAA---------TRTKI----IAR-PAQAAPSKRQHDSADHGD-WEQ 578 P P VA T+ KI AR P P+ GD WEQ Sbjct: 528 --------PEQPKVAGKAALHKVKTTQQKIEDKEFARVPRNVVPA---------GDEWEQ 570 Query: 579 F 579 F Sbjct: 571 F 571 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 418 bits (1074), Expect = e-118, Method: Compositional matrix adjust. Identities = 259/465 (55%), Positives = 325/465 (69%), Gaps = 32/465 (6%) Query: 126 YKSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINEATEINRKGAMDSDDQANQV 185 + ++ L AQG + EA +L + ++ E + + A++V Sbjct: 123 FTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAHEV 182 Query: 186 YQQARLAIVGLIAS-CMALALLMSWWIARLVARPLTHAVDIARQVAAGDLRAHIAANTSK 244 A+ +VG+++ + ++ + + R + RPL+ AV +AR+VA GDL I TSK Sbjct: 183 SANAQ-QLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVV-TSK 240 Query: 245 DETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRTEQQAGALEETA 304 DETGQLL AL+ MN+ L IV +VR+GTDTI+TAS++IATGN++LSSRTE+QA +LEETA Sbjct: 241 DETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETA 300 Query: 305 SAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAINDSSRRIVDIIA 364 S+MEELTSTV+QN+DNARQ+NQLA++ASEVA GG VV +VV TMG+INDS+ +IVDII Sbjct: 301 SSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIG 360 Query: 365 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKTLIDDSVT 424 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAA+EIKTLIDDSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVE 420 Query: 425 KVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINNAVAQMDENTQQ 484 KV GS+LV +AG TM EVV SV+RV+DI+ EITAAS EQT GIEQIN AV QMD+ TQQ Sbjct: 421 KVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 485 NAALVEQAAAAAKALQEQAARLSQTVSVFHLDASQAPLVSNTANTAAAHNKAARNVLPRH 544 NAALVE+AAAAA++LQ+QA LSQ VSVF LDA+ A A +R Sbjct: 481 NAALVEEAAAAAESLQDQANNLSQVVSVFKLDAN-----------AVALQATSR------ 523 Query: 545 PAVAATRTKIIARPAQAAPSK-------RQHDSADHGD---WEQF 579 VAA ++ +++PAQ S RQ SA GD WEQF Sbjct: 524 --VAAPASRPVSKPAQQIRSANVDKQIVRQRASATAGDGDEWEQF 566 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.124 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 862,699 Number of extensions: 26924 Number of successful extensions: 280 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 21 Length of query: 579 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 491 Effective length of database: 895,685 Effective search space: 439781335 Effective search space used: 439781335 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)