BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3637.p (555 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons... 162 6e-41 gi|152982741|ref|YP_001352306.1| hybrid two-components system re... 127 2e-30 gi|152981134|ref|YP_001352907.1| signal transduction protein [Ja... 118 1e-27 gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/re... 117 2e-27 gi|152982497|ref|YP_001353355.1| two-component hybrid sensor and... 114 1e-26 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 162 bits (409), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 139/241 (57%), Gaps = 3/241 (1%) Query: 315 GSLVKSRQDAMQASHAKSRFLSNMSHEFRTPLNGVLGYSDAL--REELGESPLAQYATAI 372 +L +++ A A+ AK+R+++ +SHE R+PLN +LGYS L E+L +P T I Sbjct: 631 AALQSAKEAAESANQAKTRYVAGISHELRSPLNSILGYSQILLKNEQLDAAPRTAIQT-I 689 Query: 373 HDSGNRLLDLVNAILEVTELEDQRVAIQAEPENIRELISQAVARHYPDAQAKGLSLECRI 432 SG LL LV+ +L++ +E R+ ++ P I ++ P A+AKGL L+ Sbjct: 690 QRSGEHLLGLVDELLDLARIEADRMRLEPAPILFAAFIDDLLSMVRPQAEAKGLRLQYTH 749 Query: 433 GDEVPQVVVCDQRKVLRVLENLLGNAVRYTDSGRILVEVERSGSQLSVRIKDTGIGIPAG 492 G ++P V+ D +++ ++L NLL NA+R+TD+G + + VE +G + + DTGIGI Sbjct: 750 GGDLPHYVLADGKRLRQILINLLTNALRFTDTGSVTLHVECTGVSMRFDVIDTGIGIAVQ 809 Query: 493 QLDTIFEKFTQADDSERRARDGAGLGLTIAQRLVTLMGGKLMLQSKQHQGSTFSFTLPLQ 552 IF+ F + R GAGLGL I ++L+ +M G L L S Q QGSTF LPL Sbjct: 810 DRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLILMMNGSLNLISTQGQGSTFVVRLPLM 869 Query: 553 E 553 E Sbjct: 870 E 870 >gi|152982741|ref|YP_001352306.1| hybrid two-components system response regulator and sensor kinase [Janthinobacterium sp. Marseille] Length = 948 Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 136/243 (55%), Gaps = 8/243 (3%) Query: 316 SLVKSRQDAMQASHAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYATAIHDS 375 SL+K++ A A+ AK+ FL+ MSHE RTPL+G+LG + Y A+ S Sbjct: 459 SLLKAKLHADDANTAKTLFLTTMSHELRTPLHGLLGALELFSLTAVTDQQRMYLHAMQQS 518 Query: 376 GNRLLDLVNAILEVTELEDQRVAIQAEPENIRELISQAVARHYPDAQAKGLSLECRIGDE 435 + LL V+ L++ +E ++ + L+ + +A + A+ K L + C + D Sbjct: 519 SSILLKTVSQTLDIARIEAGAFELETTAFSSLALLEEVIAAYAAPAERKALCI-CGVPDP 577 Query: 436 -VPQVVVCDQRKVLRVLENLLGNAVRYTDSGRI-----LVEVERSGSQLSVRIKDTGIGI 489 +P+++V D ++ ++L NL+ NA+++TDSG++ L+ +E + + ++++D+G GI Sbjct: 578 AIPELLVGDVTRIKQILNNLMSNAIKFTDSGQVVLRSRLLNLEHGMATIVLQVEDSGRGI 637 Query: 490 PAGQLDTIFEKFTQADDSERRARDGAGLGLTIAQRLVTLMGGKLMLQSKQHQGSTFSFTL 549 L IFE F Q + + + + G GLGL+I +R +MGG + S+ G++FS T+ Sbjct: 638 DQVHLGRIFEPFYQVEQNA-QLKSGTGLGLSICRRFAQMMGGTIWAMSEPGSGTSFSLTV 696 Query: 550 PLQ 552 LQ Sbjct: 697 SLQ 699 >gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 898 Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 143/296 (48%), Gaps = 10/296 (3%) Query: 34 WLGALKELATSRQNNLEDARRDAQSLSRLFLEHAYRTIEAADQAAVYLRYRYGERGQNLD 93 W +L ++ E+A + A SLS+ + ++ R+IE DQ A ++Y + + L Sbjct: 42 WGVVYSKLENDKKILQENAAKQAVSLSKAYAQYLTRSIEQLDQLAQQIKYGWEQSKGYLG 101 Query: 94 LATEIANGLVARNVYNLFSIVDSKGDVALSSKPFTPI-NLSDREHIQVHMHGGPDKLFIS 152 I GL+ ++ +I D G +S P T + +SDRE+ + H H +L I Sbjct: 102 FEEMIGKGLLNVPQFSSVAIYDVDGRPLTTSVPVTQMFTVSDREYFKFHAHNMSAELRIG 161 Query: 153 KPVLGRVSNKWSLQLTRRINHPDGSFGGVVVVSMDPQYFTSLYHQIDVGHHGVITLLGAD 212 P +GR+S + +Q+TRR+ + DGSF GV+V+ + P++FT +GH GV+ +G D Sbjct: 162 TPTMGRLSKERIVQVTRRLENEDGSFAGVLVLGLAPEFFTLFSDDPILGHDGVLAFIGND 221 Query: 213 GVVRVRRTGEMDAMGEQVSGGKVYAAMLAQGDGVVEAVSR--IDGRERIYAFHKLRDYPL 270 GV RV +M E + Q + + +R D A KL+ YP Sbjct: 222 GVERV---AQMRGRKEDAFSLVSFPLRAEQSPSNIVSNARQYADTDTHFIATQKLKGYPF 278 Query: 271 YASVGIDIEERLAPYYRERNRTLL--LATLITLAVLLFNALLIWLAGSLVKSRQDA 324 + VG+ E+ L PY E N L +A + +LLF +W++ L +Q A Sbjct: 279 FVMVGLSKEDILLPY--ENNLALYRKIAVFGSALLLLFATAAMWMSIRLAWRKQQA 332 >gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 702 Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 127/235 (54%), Gaps = 5/235 (2%) Query: 320 SRQDAMQASHAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYATAIHDSGNRL 379 ++ +A A+ AKS FL+ MSHE RTP+NG+LG E + ++ S L Sbjct: 321 AKDEAESANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAETSDRTQREHLETAQYSAEAL 380 Query: 380 LDLVNAILEVTELEDQRVAIQAEPENIRELISQAVARHYPDAQAKGLSLECRIGDEVPQV 439 L ++N IL+ ++LE + +A ++ + + + + L+L E+P++ Sbjct: 381 LSILNDILDFSKLESGNLQFEAAQFDLLKTMDSVINLMASRSCDASLALAVECPAEIPRM 440 Query: 440 VVCDQRKVLRVLENLLGNAVRYTDSGRI-----LVEVERSGSQLSVRIKDTGIGIPAGQL 494 +V D ++ +VL NL+ NA+++T+ G + L+ + +++ + D+GIGI Sbjct: 441 LVGDANRLRQVLLNLINNALKFTEQGGVTLKVALLNLNAGQARMRFSVIDSGIGIAPEAQ 500 Query: 495 DTIFEKFTQADDSERRARDGAGLGLTIAQRLVTLMGGKLMLQSKQHQGSTFSFTL 549 +F+ F+QAD+S R G GLGL+I +++V + GG + + S + +GS F F L Sbjct: 501 ARLFQAFSQADNSISRRFGGTGLGLSICKKIVDMQGGSIGVHSAEGKGSEFWFEL 555 >gi|152982497|ref|YP_001353355.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 599 Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 2/234 (0%) Query: 319 KSRQDAMQASHAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYATAIHDSGNR 378 +S++ A +++ AKS+FL+ SH+ R P++ + Y LRE+ + Q I + Sbjct: 215 RSKESADRSNQAKSQFLAAASHDLRQPVHALSLYVGVLREQSLNAKSRQLVDHIERATAA 274 Query: 379 LLDLVNAILEVTELEDQRVAIQAEPENIRELISQAVARHYPDAQAKGLSLECRIGDEVPQ 438 + L + +L ++ L+ + + ++ L+ Q + P A K L L G V Sbjct: 275 MGRLFDGLLNISRLDAGVIRPRLRHCSLAALLDQLQLEYAPRAATKSLVLRLHRG--VVP 332 Query: 439 VVVCDQRKVLRVLENLLGNAVRYTDSGRILVEVERSGSQLSVRIKDTGIGIPAGQLDTIF 498 V D + R+L NL+ NA+R+T SG +L+ R G + V + DTG+GI A + IF Sbjct: 333 AVYSDPVLLDRILRNLVDNAIRHTQSGGVLIACRRRGKFVQVEVWDTGVGIAAADQEKIF 392 Query: 499 EKFTQADDSERRARDGAGLGLTIAQRLVTLMGGKLMLQSKQHQGSTFSFTLPLQ 552 +F Q + ER G GLGL I +R L+G +L+L+S+ +GS F +LP+ Sbjct: 393 MEFHQVGNPERNQSKGLGLGLAIVRRTADLLGHRLILRSRPGRGSVFKLSLPVH 446 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,208,629 Number of extensions: 50331 Number of successful extensions: 264 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 226 Number of HSP's successfully gapped: 28 Length of query: 555 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 467 Effective length of database: 895,685 Effective search space: 418284895 Effective search space used: 418284895 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)