BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3636.p
         (211 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982489|ref|YP_001354645.1| twitching motility two-componen...    63   1e-11

>gi|152982489|ref|YP_001354645.1| twitching motility two-component
           response regulator transcription regulator protein
           [Janthinobacterium sp. Marseille]
          Length = 121

 Score = 62.8 bits (151), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 86  VLVIEDNHLQRELYAGAMASWGLPLDLVYCDNGYKALLEIARSKPDVVLADIVMEGMDGY 145
           +LV++D+  +R      +   G  +     +NG +ALL+I   KP ++L DIVM G +G+
Sbjct: 6   ILVVDDSPTERYFLTDILIKRGFSVS--TAENGEEALLKIKADKPQLILMDIVMPGQNGF 63

Query: 146 EVVKTILHDPQLRDVSIAIVSSLGQD 171
           +V ++I  DP+ +DV I I +S GQ+
Sbjct: 64  QVTRSITRDPETQDVPIIICTSKGQE 89


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 495,641
Number of extensions: 20680
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 132
Effective length of database: 928,958
Effective search space: 122622456
Effective search space used: 122622456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)