BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3632.p (305 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 196 2e-51 gi|152980915|ref|YP_001353545.1| LysR family transcriptional reg... 179 2e-46 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 176 1e-45 gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 174 8e-45 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 171 3e-44 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 196 bits (497), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 170/289 (58%), Gaps = 3/289 (1%) Query: 6 QFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQSGEAF 65 + E FV +A LG+LS AA AL ++ AA++ LA LE RLG RLV R+TR + L+ GE + Sbjct: 64 ELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEIY 123 Query: 66 YRQCKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPDITLDV 125 L ++KE E+ V++ AP GLLRV ++L F I+PL+ F R YP + + Sbjct: 124 LGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQVEVQF 183 Query: 126 VAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPRTLEQL 185 +++ +DL+++G D+AIR PD+ + R+L S RR L A+P YL G P+TL L Sbjct: 184 EVSDKPIDLVENGFDLAIRFGTL-PDTRLNARKLMSNRRFLCASPIYLERHGTPQTLADL 242 Query: 186 SGHDLLVYSHSN-TPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILIQPNY 244 S H + + ++ + RFT RDG + + + + SNDG I+ AL+ GILI+ + Sbjct: 243 SRHRCITHRQNDEAAATWRFT-RDGRNEVIKVESALSSNDGDIVLGWALDAHGILIRSEW 301 Query: 245 IIYDDVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQH 293 + V +GRL VL ++ LP + + Y R++ + R FIDFL++H Sbjct: 302 DLAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFLIEH 350 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 179 bits (454), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 165/303 (54%), Gaps = 7/303 (2%) Query: 1 VDRWMQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 +DR ++FV V + GS S AA+ L +S SR LA LEE GARL+ R+TR+L L+ Sbjct: 1 MDRLSAMQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTA 60 Query: 61 SGEAFYRQCKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 +G +C+ L + + +V AP GLLR+T S SF H++ + + +LYP Sbjct: 61 AGAEMLPRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPG 120 Query: 121 ITLDVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPR 180 +T+D++ +R V+L++ ID+AIR + E D N+ RRL R ++ AAP YL G P Sbjct: 121 VTVDMLVLDRVVNLVEERIDLAIRISK-ELDPNLIARRLTVCRSVVCAAPAYLHEHGKPT 179 Query: 181 TLEQLSGHDLLVYSHSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILI 240 EQL H+ L +S+ S+ RD ++ + + +ND + AAL G GI + Sbjct: 180 QAEQLVLHNCLTHSYY---GSVWLLERDKLPVNVAVKGNISANDASSLLPAALAGAGIAM 236 Query: 241 QPNYIIYDDVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQHFAEMDYE 300 P ++ + +G+L+P+L E+ + Y RKH+PA +R +DFL F + E Sbjct: 237 LPTFLAAPYIRSGQLLPLLPEYHPQEFGLFGVYASRKHMPATLRTMLDFLAARFTD---E 293 Query: 301 RKW 303 W Sbjct: 294 PDW 296 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 176 bits (447), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 156/287 (54%), Gaps = 1/287 (0%) Query: 9 LFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQSGEAFYRQ 68 F + + GSL+ A LG++ A ++ LA LE+RLG RL+ R+TR + ++ GE + + Sbjct: 9 FFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTHEGEIYLAE 68 Query: 69 CKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPDITLDVVAA 128 LT+++E E V+ + P GLLR+ ++ F +HI+P + F YP+I + + + Sbjct: 69 GARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPEIEVQLQLS 128 Query: 129 NRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPRTLEQLSGH 188 +R +L+D D+ IR E PD+ I R++A+ RR+L AAP Y+ G P L Sbjct: 129 DRPANLIDQAFDIGIRIGEM-PDARIIARKIAANRRLLCAAPAYIKRHGTPSVPRDLQKL 187 Query: 189 DLLVYSHSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILIQPNYIIYD 248 +V ++ H+ Q S+ + + SNDG+ A AL G GIL++ + + Sbjct: 188 QCIVLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGILMRSQWDVAA 247 Query: 249 DVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQHFA 295 + +GRLV VL +W LP I Y R +L AKV F+DF+ FA Sbjct: 248 YLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFVSARFA 294 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 174 bits (440), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 91/293 (31%), Positives = 163/293 (55%), Gaps = 1/293 (0%) Query: 9 LFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQSGEAFYRQ 68 F + + GSL+ AA+ LG++ + S+ LA +E RL RL+ R+TRR+ L+ GE + Sbjct: 9 FFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTPEGEIYLAD 68 Query: 69 CKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPDITLDVVAA 128 + +++ E+ ++ ++ GLL+V+++ F +HI+P L F RLYP++ + + Sbjct: 69 GTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPEVEVQLHLT 128 Query: 129 NRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPRTLEQLSGH 188 +R V+L++ G D IR + PD+ ++ R++A RR++ A+P YL G P L H Sbjct: 129 DRPVNLVEQGFDADIRFGQI-PDARLSARKIADNRRLVCASPAYLQKHGTPLVPRDLQQH 187 Query: 189 DLLVYSHSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILIQPNYIIYD 248 + ++ S+ Q ++ + + +NDG+ + AL+G GI+++ + + Sbjct: 188 NCILLRESDEIYGSWHFSSGIKQETVKVRGALSANDGECATSWALDGQGIVVRSEWDVAP 247 Query: 249 DVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQHFAEMDYER 301 + +GRL VL+EW LP+ I I + + HL AK R +DF++Q F ER Sbjct: 248 YLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAFEGQRRER 300 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 171 bits (434), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 160/304 (52%), Gaps = 25/304 (8%) Query: 8 ELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQSGEAFYR 67 ELF AE GS + AA G++ AA SRS++ LE RLG RL R+TR++ L+ G ++ Sbjct: 14 ELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGRVYFE 73 Query: 68 QCKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPDITLDVVA 127 QC+ AL Q+ +AE V+ + P+GLLR++ + + PLLP F + YPD+ ++V Sbjct: 74 QCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQVEVHI 133 Query: 128 ANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPRTLEQLSG 187 +NR +D + D+AIR R DSN+ R+L +L AAP YL G P+TLE L Sbjct: 134 SNRNIDFAEEAYDLAIRGRA-PTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLEDLQK 192 Query: 188 HDLLVYSHSNT---------PN------SLRFTHRDGSQCSLDIHALMQSNDGQIIRAAA 232 H+ + + +T PN ++ G C+ D+ ++ A Sbjct: 193 HECIQFELPSTGRRIPWVFHPNGKVQGKAVDIMTNGGYSCAEDVLGIV---------TLA 243 Query: 233 LEGLGILIQPNYIIYDDVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQ 292 G G++ +I+ DD+ GRLV +L ++ + Y +HL ++VR F+DFL++ Sbjct: 244 RSGAGLVQTYRFIVEDDLREGRLVELLPQFGATSRPFILLYPHARHLSSRVRAFVDFLME 303 Query: 293 HFAE 296 + Sbjct: 304 KLVQ 307 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 645,475 Number of extensions: 25030 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 30 Length of query: 305 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 222 Effective length of database: 914,170 Effective search space: 202945740 Effective search space used: 202945740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)