BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3625.p (245 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 174 3e-45 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 169 1e-43 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 115 3e-27 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 103 1e-23 gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxo... 102 2e-23 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 174 bits (442), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 148/239 (61%), Gaps = 10/239 (4%) Query: 10 FVTGSSRGIGRAIALRLAREGYDIVLHCHSRREAAEQVAAEIASLGRKTRVLQFDVAQRE 69 VTG+SRGIGRAIA LA+ G ++ S AA +E G K VL + A R Sbjct: 12 LVTGASRGIGRAIAQELAKLGAKVIGTATSESGAA--AISEYLGNGGKGVVLDVNDAARS 69 Query: 70 AASQVLLEDIEQH-GCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNPLVM 128 A L+++I++ G +V NAGIT+D M E+WDSV+ TNL + ++ Sbjct: 70 VA---LIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVLR 126 Query: 129 PMVRRRAPGRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAPG 188 M++ + GRI+ + SV G GN GQ+NY+AAKAGV G ++ALA E+ R+ITVNC+APG Sbjct: 127 GMMKAK-TGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCIAPG 185 Query: 189 LIETDMTE---EAPVEEILKLIPARRAGKPEEVAAAVAYLMSPDAAYVTRQVISVNGGL 244 I+TDMT+ E + +L+ +P R G PE++AAAV++L SP A+Y+T + VNGG+ Sbjct: 186 FIDTDMTKTLSEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHVNGGM 244 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 169 bits (428), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 5/238 (2%) Query: 10 FVTGSSRGIGRAIALRLAREGYDIVLHCHSRREAAEQVAAEIASLGRKTRVLQFDVAQRE 69 VTG G+G AI ++LA GY +V + A++ + G DV+ + Sbjct: 6 LVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYPCDVSDYD 65 Query: 70 AASQVLLEDIEQHGCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNPLVMP 129 +A Q + + ++ G +V NAGITRD F M DWD+V+ TNLD +N+ P+ Sbjct: 66 SAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMTKPVCDG 125 Query: 130 MVRRRAPGRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAPGL 189 MV R GRI+ ++SV+G G GQ NYSAAKAG+ G TKALALE+A++ +TVN ++PG Sbjct: 126 MV-ERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISPGY 184 Query: 190 IETDMTEEAPVE----EILKLIPARRAGKPEEVAAAVAYLMSPDAAYVTRQVISVNGG 243 I T M P + +I+ IP R GKPEE+A VAYL S +AA++T I++NGG Sbjct: 185 IGTKMVMAIPQDVLDTKIVPQIPMGRLGKPEEIAGLVAYLASDEAAFLTGANIAINGG 242 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 115 bits (288), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/249 (30%), Positives = 131/249 (52%), Gaps = 7/249 (2%) Query: 1 MTTSGEHSIFVTGSSRGIGRAIALRLAREGYDIVLHCHSRREAAEQVAAEIASLGRKTRV 60 M+ + +TG+SRGIG AIA RLA++G+ +V++ S A+ + A++ + + Sbjct: 1 MSKQTKKVAIITGASRGIGAAIAERLAQDGFAVVINYASSATEADALVAKLQAAQHEAIA 60 Query: 61 LQFDVAQREAASQVLLEDIEQHGCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFY 120 ++ DVA ++ E ++ G ++ NAGI + + E ++ N+ G + Sbjct: 61 VKADVANSADVRRLFDETEQKLGKVDVLINNAGILQMASLAETSDELFERTFSINVRGTF 120 Query: 121 NVLNPLVMPMVRRRAPGRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAKRDI 180 N L R GR+V +S + + Y+ +KA V T A E+ R+I Sbjct: 121 NTLRE---AATRLNDGGRVVNFSSTTVAMSLPNYSVYTGSKAAVEVLTPIFAKEMRGRNI 177 Query: 181 TVNCVAPGLIETDM----TEEAPVEEILKLIPARRAGKPEEVAAAVAYLMSPDAAYVTRQ 236 TVN VAPG + TD+ EA ++++ + P +R G+P+++AAAV++L+ D ++ Q Sbjct: 178 TVNAVAPGPVATDLFFNGKTEAQIQQLANMPPLQRLGQPDDIAAAVSFLVGRDGGWINGQ 237 Query: 237 VISVNGGLA 245 V+ NGGLA Sbjct: 238 VLRANGGLA 246 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 119/241 (49%), Gaps = 12/241 (4%) Query: 10 FVTGSSRGIGRAIALRLAREGYDIVLHCHSRREAAEQVAAEIASLGRKTRVLQFDVAQRE 69 FV G SRGIG AI RLAR+G + S + A+ VA EI + G + + D + Sbjct: 13 FVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAGGRALAIHADSSDAS 72 Query: 70 AASQVLLEDIEQHGCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNPLVMP 129 A Q + + G +V NAG+ ED+D + N+ + Sbjct: 73 AVQQAIQAAAKAFGRIDILVNNAGVLALAPVEDFKLEDFDRTVAVNVRSVFVATQEAARH 132 Query: 130 MVRRRAPGRIVTLASVSGLIGNR----GQVNYSAAKAGVIGATKALALELAKRDITVNCV 185 M GRI+T+ S + +R G Y+ +KA ++G TK LA +L R ITVN V Sbjct: 133 MGE---GGRIITIGSTN---ADRMPFAGGAVYAMSKAAIVGLTKGLARDLGPRGITVNNV 186 Query: 186 APGLIETDMT-EEAPVEEILK-LIPARRAGKPEEVAAAVAYLMSPDAAYVTRQVISVNGG 243 PG ++TDM + + LK L+ R GK EE+A+ VAYL P+A Y+T ++++GG Sbjct: 187 QPGPVDTDMNPANSDFADTLKGLMAIGRYGKDEEIASFVAYLAGPEAGYITGASLTIDGG 246 Query: 244 L 244 Sbjct: 247 F 247 >gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 258 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 130/256 (50%), Gaps = 16/256 (6%) Query: 1 MTTSGEHSIFVTGSSRGIGRAIALRLAREGYDIVLHCHSRREAA--EQVAAEIASLGRKT 58 M + VTG GIG+ +A RL + G ++V+ R+AA ++VA EI G Sbjct: 1 MNSFSSKVAIVTGGGSGIGKEVAARLVKAGANVVI---GGRDAAKLQRVATEIDPSGDHV 57 Query: 59 RVLQFDVAQREAASQVLLEDIEQHGCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDG 118 R D+AQ A+ ++ + G ++ NAG+ R AF + ++D L T L G Sbjct: 58 RFHAGDIAQPATATALVDLAKQAFGGVDILINNAGVFRPKAFLEVEEAEYDWFLDTILKG 117 Query: 119 FYNVLNPLVMPMVRRRAPGRIVTLASVSGL--IGNRGQVNYSAAKAGVIGATKALALELA 176 + ++ R G IV S+ L IG YSAA AGV T+ LA+ELA Sbjct: 118 -KFFMAQAAAKAMKLRGGGAIVQTGSLWALQAIGATPSAAYSAANAGVHALTRNLAIELA 176 Query: 177 KRDITVNCVAPGLIETD-----MTEE---APVEEILKLIPARRAGKPEEVAAAVAYLMSP 228 +I +N VAPG++ET MT++ A + P R G+P +VA A+ +L S Sbjct: 177 ASNIRINTVAPGVVETPVYNTFMTDDQVKATLPAFNAFHPLGRNGQPADVAEAILFLASA 236 Query: 229 DAAYVTRQVISVNGGL 244 +A+++T V+SV+GG+ Sbjct: 237 NASWITGTVLSVDGGV 252 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 558,051 Number of extensions: 22416 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 22 Length of query: 245 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 164 Effective length of database: 921,564 Effective search space: 151136496 Effective search space used: 151136496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)