BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3618.p
         (526 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979924|ref|YP_001352205.1| histidine ammonia-lyase [Janthi...   200   1e-52

>gi|152979924|ref|YP_001352205.1| histidine ammonia-lyase
           [Janthinobacterium sp. Marseille]
          Length = 541

 Score =  200 bits (509), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 155/517 (29%), Positives = 248/517 (47%), Gaps = 36/517 (6%)

Query: 21  SLRIEEVVALARRKRGAQLHEATEFRARIARGADFLDRLLREDGT--IYGVTTGYGDSCT 78
           +L  ++V+A+AR      +  A   RA +    D+++     D    +Y   TG G    
Sbjct: 10  TLTAQQVLAVARAPH-LPVVLADSSRAALKESRDYIEATWMHDEAPMMYSFNTGVGLLKD 68

Query: 79  VTVPPELVPELPHHLYTYHGCGLGALFTPEQTRAILAARLNSLCQGFSGVSVALLEQITG 138
             +  E +      +   H  G+G  F+ E +RA +  R N+    +S   V +++++  
Sbjct: 69  TRIKVEHIELFQTQMIKAHCAGMGEPFSEEVSRATMLLRANAFASNYSAPRVEVVDRLLA 128

Query: 139 LLQHDLLPRIPCEGSVGASGDLTPLSYLAAVLCG--EREVWHQGQILPAAQALAAAGMTP 196
            L   + P +P +GSVGASGDL PLSYLAA + G  E EV +QGQ + A QA+  AG+  
Sbjct: 129 FLNAGIHPIMPQKGSVGASGDLAPLSYLAAAIAGFDEAEVMYQGQRMSAPQAITKAGIGA 188

Query: 197 LR--LRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSSFTLDGNAHHFDATL 254
           ++  L+ K+  A++NG     A+A L    AR L   A     ++   +      FD  +
Sbjct: 189 VKFDLKAKDASALINGCTASLAVAVLVAHDARNLLTDACLSLGLTLEAMRAEMAAFDDRI 248

Query: 255 FSAKPHPGQQQVAAWLQRDLRCDQAHRNE------------------KRLQDRYSVRCAP 296
             A+PH GQ + AA +++ L       +E                   R+QD YS+RC+P
Sbjct: 249 QQARPHAGQIKTAAVIRKLLSGSTRTTHEARAVQFPEELRRTDIPYSARIQDVYSLRCSP 308

Query: 297 HVIGVLNDALPGLRQFIENELNSANDNPLI---DPDGERVLHGGHFYGGHIAFAMDSMKT 353
            V G + DAL  +   ++ E+NSA DNPLI      G  ++ GG+F+G ++A AMD +  
Sbjct: 309 QVYGPVFDALDYIDNIVDKEINSATDNPLIFDKQGGGFEIISGGNFHGQYLAQAMDLLAM 368

Query: 354 AVANIADLLDRQMALMVDPRYNNGLPANLSGASGARAPINHGLKALQISASAWTAEALKL 413
           A+ ++  + +R++A ++DP  + GLP NL   +G R  +N G   +Q S S+   E   L
Sbjct: 369 AITDLGSICERRVARLIDPTLSWGLPRNL--MTGVRG-VNTGYPVVQCSLSSLVMENRTL 425

Query: 414 TMPASVFSRSTECHNQDKVSMGTIAARDCLRVLELTEQVAAALLITVRQGVWLRNQRQQA 473
            MP SV S   + +++D VS  T  AR    V+  T+ +    ++   Q + +       
Sbjct: 426 CMPGSVDSIPAKGNSEDHVSNSTWCARKAATVVANTQYIIGVEMLLAAQALTMTEDL--- 482

Query: 474 SDTPLQDLPAGRLAAMQAALAQDIAVVDEDRMLEPDL 510
              P   L  G  AA Q    Q  A ++ DR    D+
Sbjct: 483 --LPGFVLGQGTQAAYQEIRRQIPACLEGDRWFHNDI 517


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,103,873
Number of extensions: 42841
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 438
Effective length of database: 895,685
Effective search space: 392310030
Effective search space used: 392310030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)