BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3615.p
         (586 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase [Janthino...    56   7e-09

>gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 664

 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 162/403 (40%), Gaps = 58/403 (14%)

Query: 112 LHPTEDAPHEQEAAPWPALRGDFPALVVYTSGSTGAAQAIPKQLA-QMANEVATLETLFG 170
           LH   D   + E  P P +  + P  ++YTSGSTG  + +       +   + T++  F 
Sbjct: 247 LHDLVDK-QKAECEPVP-VGAEHPLFILYTSGSTGKPKGVQHSSGGYLLWAMLTMKWSFD 304

Query: 171 ARLGQ-----ADIISTVSHQHI-YG-LLFKVLWALCAGRPIQAGSAFFPEDLQRLVGQRP 223
            +        ADI     H ++ YG L       +  G P+   +  F + +Q+    + 
Sbjct: 305 IKPNDVYWCTADIGWITGHTYVTYGPLACGATQIVFEGVPMFPNAGRFWDMVQK---HKV 361

Query: 224 WVLLSSPAHLKRLPEQA--------TQPEVTQLRAIFSSGGPLPAEAARDTALTLGQRPL 275
            +  ++P  ++ L + A        ++ +++ LR + S G P+  EA       +G    
Sbjct: 362 TIFYTAPTAIRSLIKAADADPAVHPSKYDLSSLRLLGSVGEPINPEAWMWYYKNIGGERC 421

Query: 276 EI---YGSSETGG-IAWRQPESDPALRREHWQVMPGVEVRI----------GASGELEVR 321
            I   +  +ETGG +    P + P +       +PG+   +          G  G L ++
Sbjct: 422 PIADTFWQTETGGHVISPMPGATPMVPGSCTLPLPGIAAAVVDEVGHDLANGKGGLLVIK 481

Query: 322 SP---------HLPDR---SWF--------GLADRAVLVEEIAGAFELRGRSDRIVKLEE 361
            P         + P+R   S+F         LA    +  E  G F + GR D ++ +  
Sbjct: 482 RPWPSMIRNIWNDPERFQKSYFPHELGGTIYLAGDGAIRNEETGYFTITGRIDDVLNISG 541

Query: 362 KRISLTRIEQLLAASPLVAEVRVIVHQGRRARQFIAAFVVPSASGRALLQAQGKLTLNGA 421
            R+    IE  L A+P+VAE  V+        + I AFVV   S     +A+    +   
Sbjct: 542 HRMGTMEIESALVANPIVAEAAVVGKPDETTGESICAFVVLKRSRPTGDEAK---QIAKE 598

Query: 422 LKSVLAGAIEAIALPRLWRYLDAMPVNAQGKLTLSALTALLEN 464
           L+  +A  I  IA P+  R+ D +P    GK+    L  L ++
Sbjct: 599 LRDWVAKEIGPIAKPKEIRFGDNLPKTRSGKIMRRLLRVLAKD 641


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,364,536
Number of extensions: 57532
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 498
Effective length of database: 895,685
Effective search space: 446051130
Effective search space used: 446051130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)