BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3609.p (523 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 343 2e-95 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 330 1e-91 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 318 6e-88 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 317 9e-88 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 302 4e-83 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 343 bits (879), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 222/520 (42%), Positives = 312/520 (60%), Gaps = 4/520 (0%) Query: 4 LHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERLSLAKEWRENI 63 + L + RL+ G+A+++ LMV M +V + +L+ VG + D++ + + LA+EW + Sbjct: 3 ITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAV 62 Query: 64 VVNVARALALGVTANDTLLKFFSDDMAYLVKRTTEIQKRYTELDQTEEGKAILQRMGEER 123 VN AR LA T + FF M R E+QK + +T E K + + + R Sbjct: 63 DVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVAR 122 Query: 124 KRYLVVRQKLEEVGADAA-TRAQLV--QDMQSIATAYIKQGTNLVHYQEKRTHELGGEID 180 Y +RQ + ++ A+ AQL+ + M AY ++ ++K E G I Sbjct: 123 NAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTSIQ 182 Query: 181 AALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDLTASVPAAQG 240 +A R +L+G AA++ + W L SI PL+ T+ +A+GDL+A + + Sbjct: 183 SAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIEVS-S 241 Query: 241 RSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTEQAASSLEQT 300 E L+ + +M +SL VS+ R ++ AS + A+GN DLS+RTE+ ASSL +T Sbjct: 242 NDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLGET 301 Query: 301 ASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDEASRRIADII 360 A++M Q+ ST +Q+A+ AR AN ASDVA +GG V+ +VV TM I+E++R+I DII Sbjct: 302 AASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVDII 361 Query: 361 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKDLINASM 420 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AA+EIK LI S+ Sbjct: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDSV 421 Query: 421 SAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAAISQLEQATQ 480 V G LVN+AG + ++V +V V +AEI A++EQS GI +VN AI Q++Q TQ Sbjct: 422 GKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVTQ 481 Query: 481 QNAALVEQTTSATLQLNQQAVVLAEVISDFKLPLEHSALV 520 QNAALVE+ +A L QA LA V+S FKL A V Sbjct: 482 QNAALVEEAAAAAESLQDQAGNLARVVSQFKLDGNQPAFV 521 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 330 bits (846), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 221/516 (42%), Positives = 316/516 (61%), Gaps = 10/516 (1%) Query: 4 LHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERLSLAKEWRENI 63 + L +G RL L +AVI+ LM +M++V + +L+ V QA + EE A + L EW Sbjct: 3 ISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQAT-VHMEEAAHKERLTHEWYLGN 61 Query: 64 VVNVARALALGVTANDT-LLKFFSDDMAYLVKRTTEIQKRYTELDQTEEGKAILQRMGEE 122 V N R A + +ND + K F +M + +++Q L +EEGK ++ +GE+ Sbjct: 62 VANAIRTAAR-IRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMSVVGEK 120 Query: 123 RKRYLVVRQ-----KLEEVGADAATRAQLVQ-DMQSIATAYIKQGTNLVHYQEKRTHELG 176 R Y+ +R+ K E A +LV+ M AY + +V +Q+ Sbjct: 121 RTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVIFQRAK 180 Query: 177 GEIDAALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDLTASVP 236 ++DA R +L+ + +++ + L WLL+RSI PL ++ +A+GDL + Sbjct: 181 ADVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDLRNKIQ 240 Query: 237 AAQGRSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTEQAASS 296 ++ E LL + +M + L VS+ R ++ AS++ AAGN DLS+RTE+ ASS Sbjct: 241 SS-SNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASS 299 Query: 297 LEQTASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDEASRRI 356 LE+TAS+ME++ ST +Q+A+ AR AN AS VA++GG+V+ VV TM +I+ ++++I Sbjct: 300 LEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKI 359 Query: 357 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKDLI 416 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AA+EIK LI Sbjct: 360 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLI 419 Query: 417 NASMSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAAISQLE 476 S+ V G LV +AG + +VVQ+V V ++EI A++EQS GI +VN AI Q++ Sbjct: 420 GDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMD 479 Query: 477 QATQQNAALVEQTTSATLQLNQQAVVLAEVISDFKL 512 Q TQQNAALVE+ +A LN+QA LAE +S FKL Sbjct: 480 QVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKL 515 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 318 bits (814), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 212/521 (40%), Positives = 309/521 (59%), Gaps = 16/521 (3%) Query: 1 MSLLHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERLSLAKEWR 60 M + +G RL LG+ V++ L +A+ + QL AV + E + + +W Sbjct: 1 MIFFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWA 60 Query: 61 ENIVVNVARALALGVTANDTLLKFFSDDMAYLVKRTTEIQKRYTELDQTEEGKAILQRMG 120 ++AR + + +A+ L +F + A K++ EI ++ L T++ K + ++ Sbjct: 61 AITKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKIL 120 Query: 121 EERKRYLVVRQ---KLEEVGADAATRAQLVQDMQSIATAYIKQGTNLVHYQEKR----TH 173 + RK +L R+ KL+ G +A A ++ T V + K+ T Sbjct: 121 DVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTA 180 Query: 174 ELGGEIDAALDRSRLVLLGAT--AASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDL 231 +L +++AA R +L+LL A A I CA W LT I PL R+A GDL Sbjct: 181 QLS-DVEAASTR-QLMLLSAMVLAFGIFCA----WRLTIGITRPLKTAVDAARRVAGGDL 234 Query: 232 TASVPAAQGRSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTE 291 T + A + + E LL + +M + L+ +V + R ++ AS+E AAGN DLS+RTE Sbjct: 235 TNDIKA-ESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTE 293 Query: 292 QAASSLEQTASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDE 351 Q ASSLE+TAS+ME++ ST +Q+A+ AR AN AS+VA +GG V+ VVQTM+ I+E Sbjct: 294 QQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINE 353 Query: 352 ASRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAARE 411 +SR+I DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AA+E Sbjct: 354 SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKE 413 Query: 412 IKDLINASMSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAA 471 IK LI S+ V G LV +AG + ++V ++ V + EI+ A++EQS GI ++N A Sbjct: 414 IKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQA 473 Query: 472 ISQLEQATQQNAALVEQTTSATLQLNQQAVVLAEVISDFKL 512 I Q++ TQQNA+LVE+ +A + QA L +V+ FKL Sbjct: 474 IGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 317 bits (813), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 209/515 (40%), Positives = 308/515 (59%), Gaps = 4/515 (0%) Query: 1 MSLLHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERLSLAKEWR 60 MS L +G RLA+G+ +++ L VA + L R +A ++ E+ + + +W Sbjct: 1 MSFLSNFRIGTRLAIGFILVLALSVASTAIALIHARQNAEATRLMMEKPLAKERITSDWY 60 Query: 61 ENIVVNVARALALGVTANDTLLKFFSDDMAYLVKRTTEIQKRYTELDQTEEGKAILQRMG 120 I +AR + + +DTL F+D +A K+ + + K + ++ + + Q+ Sbjct: 61 VFIYSAIARTSMIARSTDDTLSDVFADVIADSTKQGSALLKSLEGMITSDAERKLYQQTI 120 Query: 121 EERKRYLVVRQKL---EEVGADAATRAQLVQDMQSIATAYIKQGTNLVHYQEKRTHELGG 177 E RK Y ++ + ++ G A +Q A AY ++ + Q K ++ Sbjct: 121 ELRKAYQKGKEDVMNAKKGGNKAEAERAYLQIFLPAAKAYQEKVLEFLSVQRKAIDQISR 180 Query: 178 EIDAALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDLTASVPA 237 +ID A RS +++G I+ ++TRSI PL + R A GDLT + Sbjct: 181 DIDDAHQRSLNLMIGLGVLLILLGAACAIVITRSITKPLRSAIDVASRAADGDLTGDI-G 239 Query: 238 AQGRSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTEQAASSL 297 + E+ L+ +G M + L+ +V+ + +N AS+E A GN DLS+RTEQ A+SL Sbjct: 240 KPSKDEIGDLMRALGGMNDGLKKIVNDVKAGTDFINTASAEIAHGNLDLSSRTEQQAASL 299 Query: 298 EQTASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDEASRRIA 357 E+TAS+ME++ ST +Q+AE A+ AN ASDVA +GG V+ +++ TM I+ +SR+I Sbjct: 300 EETASSMEELTSTVKQNAENAQQANQLAVSASDVAAKGGAVVKEMISTMGAINSSSRKIV 359 Query: 358 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKDLIN 417 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AA+EIK LI Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKSLIG 419 Query: 418 ASMSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAAISQLEQ 477 S+S V G LV++AGK + DVV ++ V + EI A++EQS GI +VN AISQ++Q Sbjct: 420 DSVSNVDAGSKLVSEAGKTMDDVVNSIRHVTDIMNEIMAASQEQSSGIEQVNTAISQMDQ 479 Query: 478 ATQQNAALVEQTTSATLQLNQQAVVLAEVISDFKL 512 TQQNAALVE+ +A+ L QA LA++++ FKL Sbjct: 480 VTQQNAALVEEAAAASQSLRDQADKLAQIVNVFKL 514 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 302 bits (773), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 207/521 (39%), Positives = 312/521 (59%), Gaps = 22/521 (4%) Query: 4 LHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERL------SLAK 57 + L +G+RL+L + +V L+V +L L R +G ND + E +R ++ K Sbjct: 1 MKNLKIGQRLSLSFGSMVILLV--VLATLAFTR-IGGLNDAISEVDGDRYPKTVLANVMK 57 Query: 58 EWRENIVVNVARALALGVTANDTLLKFFSDDMAYLVKRTTEIQKRYTELDQT---EEGKA 114 + I N+ AL + A ++ + K T + EL++T E G+ Sbjct: 58 DDLNQIARNMRNALLMTEKAA------IQAELTQIGKATDSLNNALVELEKTVRSERGRQ 111 Query: 115 ILQRMGEERKRYLVVRQ---KLEEVGADAATRAQLVQDMQSIATAYIKQGTNLVHYQEKR 171 + + +R ++L ++ KL G A L +++ +Y+ L+ YQ + Sbjct: 112 TIAGLQADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNEL 171 Query: 172 THELGGEIDAALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDL 231 + G E +A +++L++ + +++ A + L TRSI PL + L ++A GDL Sbjct: 172 MKKSGAEANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDL 231 Query: 232 TASVPAAQGRSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTE 291 T S+ + + E LL + +M E L +V++ R ++ AS + A GN DLS+RTE Sbjct: 232 TGSI-VVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTE 290 Query: 292 QAASSLEQTASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDE 351 Q ASSLE+TAS+ME++ ST +Q+AE AR +N AS+VA +GG V+ VV TM I++ Sbjct: 291 QQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEIND 350 Query: 352 ASRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAARE 411 ++++I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AA+E Sbjct: 351 SAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKE 410 Query: 412 IKDLINASMSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAA 471 IK+LI S+ V G LV+DAG +R+VV++V V ++EI+ A++EQ+ GI ++N A Sbjct: 411 IKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQA 470 Query: 472 ISQLEQATQQNAALVEQTTSATLQLNQQAVVLAEVISDFKL 512 + Q++Q TQQNAALVE+ +A L QA L++V+ FKL Sbjct: 471 VMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.126 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 842,176 Number of extensions: 28245 Number of successful extensions: 322 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 214 Number of HSP's successfully gapped: 21 Length of query: 523 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 435 Effective length of database: 895,685 Effective search space: 389622975 Effective search space used: 389622975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)