BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3606.p
         (238 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980426|ref|YP_001354368.1| 3-demethylubiquinone-9 3-methyl...   409   e-116
gi|152980437|ref|YP_001354663.1| ribosomal protein L11 methyltra...    56   2e-09

>gi|152980426|ref|YP_001354368.1| 3-demethylubiquinone-9
           3-methyltransferase [Janthinobacterium sp. Marseille]
          Length = 231

 Score =  409 bits (1051), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/231 (83%), Positives = 213/231 (92%)

Query: 8   MNADPQEIQKFSELAHRWWDPGSEFRPLHEINPLRLEWINARAPLAGKKVIDIGCGGGIL 67
           MNADP E++KFS+LAH+WWDP SEFRPLHEINPLRL WIN RAPLAGK V+DIGCGGGIL
Sbjct: 1   MNADPLELKKFSDLAHQWWDPTSEFRPLHEINPLRLGWINGRAPLAGKNVVDIGCGGGIL 60

Query: 68  AESMARKGADVTGIDLSDKALKVADLHSMESGVQVRYEKIAAEDMAAREAGQYDVVTCME 127
           AESMA+ GA+VTGIDLS+KALKVADLHS+ESGVQVRYE IAAED+A REAG++DVVTCME
Sbjct: 61  AESMAKSGANVTGIDLSEKALKVADLHSLESGVQVRYELIAAEDLAEREAGRFDVVTCME 120

Query: 128 MLEHVPDPAAIVRAAATLAKPGGKLFFSTLNRNMKSYLMAIIGAEYVLRLLPKGTHDYAK 187
           MLEHVPDPAAIV A A LAKPGGK+FFST+NRN K+YL A+IGAEY+LRLLPKGTHDYAK
Sbjct: 121 MLEHVPDPAAIVAACAKLAKPGGKVFFSTINRNPKAYLHAVIGAEYLLRLLPKGTHDYAK 180

Query: 188 FITPAELAHYTREAGLQIDAFKGMGYNPLTKIYSLNEDTSVNYLMACTKLA 238
           FITPAEL+ Y REAGL IDA KGMG+NPLTKIYSLN+DTSVNYL+ACTK A
Sbjct: 181 FITPAELSRYAREAGLDIDALKGMGFNPLTKIYSLNQDTSVNYLVACTKPA 231


>gi|152980437|ref|YP_001354663.1| ribosomal protein L11
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 310

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 7/131 (5%)

Query: 27  DPGSEF-RPLHEINPLRLEWINARAPLAGKKVIDIGCGGGILAESMARKGA-DVTGIDLS 84
           DPG  F    H    L +EW+ A  P+ G  V+D GCG GILA   A+ G+ DV GID+ 
Sbjct: 140 DPGLAFGTGSHPTTRLCMEWLEAHPPV-GLSVLDYGCGSGILAMVAAKLGSTDVIGIDID 198

Query: 85  DKALKVADLHSMESGVQVRYEKIAAEDMAAREAGQYDVVTCMEMLEHVPDPAAIVRAAAT 144
            +A+K A  ++  +  +V Y  +  E  ++  A  +DVV    +   +   A ++     
Sbjct: 199 PQAIKSALFNTERNHCEVAY-YLPDEFASSGHAHTFDVVVANILANPLKVMAPMLSGR-- 255

Query: 145 LAKPGGKLFFS 155
             KPGGKL  S
Sbjct: 256 -VKPGGKLILS 265


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 567,471
Number of extensions: 23801
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 158
Effective length of database: 925,261
Effective search space: 146191238
Effective search space used: 146191238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)