BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3605.p (204 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982971|ref|YP_001354367.1| outer membrane protein A precur... 213 9e-57 gi|152982739|ref|YP_001354366.1| OmpA family protein [Janthinoba... 93 9e-21 gi|152981732|ref|YP_001352854.1| OmpA family protein [Janthinoba... 84 6e-18 gi|152982349|ref|YP_001354513.1| hypothetical protein mma_2823 [... 56 2e-09 gi|152980803|ref|YP_001354158.1| peptidoglycan-associated lipopr... 54 6e-09 >gi|152982971|ref|YP_001354367.1| outer membrane protein A precursor [Janthinobacterium sp. Marseille] Length = 206 Score = 213 bits (541), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 141/210 (67%), Positives = 156/210 (74%), Gaps = 10/210 (4%) Query: 1 MNKLAKLVFAAASAAIALSATAQETKDIKVR-PGSLYLQDGRDVVTRSGYGLCWQTAFAN 59 MNKLAKLVF AASA +A+SA AQ DIK P S Y Q + R+ GLCW T + Sbjct: 1 MNKLAKLVF-AASAIVAMSAQAQT--DIKASTPNSAYAQATNGTIVRNSTGLCWHTGYWT 57 Query: 60 GPCEEPPA-----PAPVAAAAPAPAPAPVAAPTSEKVTYAADAFFDFDKATLKPAGKAKL 114 P + P A A A +PAPA V PTSEKVT+AADAFFDFDKA LKP GKAKL Sbjct: 58 -PADSVPGCDGALVAAAAPAPASPAPAVVPVPTSEKVTFAADAFFDFDKAVLKPEGKAKL 116 Query: 115 DELVSNLKSINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGK 174 D+L S L +NLEVIIAVGHTDS+GS AYNQKLSVRRAE+VKAYLV KGV+A RVYTEGK Sbjct: 117 DDLTSKLNGLNLEVIIAVGHTDSVGSDAYNQKLSVRRAEAVKAYLVGKGVDAKRVYTEGK 176 Query: 175 GKSQPVADNKTAAGRAKNRRVEIEVVGTRK 204 G+ QPVA NKTAAGRA+NRRVEIEVVGTRK Sbjct: 177 GEKQPVATNKTAAGRAQNRRVEIEVVGTRK 206 >gi|152982739|ref|YP_001354366.1| OmpA family protein [Janthinobacterium sp. Marseille] Length = 222 Score = 93.2 bits (230), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 76/216 (35%), Positives = 109/216 (50%), Gaps = 30/216 (13%) Query: 7 LVFAAASAAIALSATAQETKDIKVRPGSLYLQDGRDVVTRSGYGLCWQT---------AF 57 L+ A+S+ +A AQ DI+V P + Y QD R VVTRS +GLCW++ A Sbjct: 9 LLLGASSSYVA----AQT--DIQVPPNNAYAQDSRGVVTRSAFGLCWRSGTWTPGDAVAG 62 Query: 58 ANG----PCEEPPAPAPVAAAAPAPAPAPVAAPTSE-KVTYAADAFFDFDKATLKPAGKA 112 +G P P AP + APA +AA + + + +D F ++A L A K+ Sbjct: 63 CDGALVSPIPNPTAPEVASHLDGKVAPAAIAANSCDFTIALESDQTFGLNQAVLNRAAKS 122 Query: 113 KLD-ELVSNLKSIN-LEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVY 170 ++D +++ L + N + G+TD +G+ NQ LS +RA +V YL KGV N Sbjct: 123 RIDRDVLPKLTACNGASGMTITGYTDLLGNARSNQALSEKRAAAVADYLKKKGVTVNMKV 182 Query: 171 TEGKGKSQPVADNKTAAGRAK-------NRRVEIEV 199 T G G SQPV D + R K NRRV IE+ Sbjct: 183 T-GVGASQPVKDCDSKLNRTKLVACLAPNRRVLIEM 217 >gi|152981732|ref|YP_001352854.1| OmpA family protein [Janthinobacterium sp. Marseille] Length = 229 Score = 84.0 bits (206), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 43/110 (39%), Positives = 61/110 (55%) Query: 90 KVTYAADAFFDFDKATLKPAGKAKLDELVSNLKSINLEVIIAVGHTDSIGSVAYNQKLSV 149 K+ +D F ++ + P+ + LD + L + +GHTDS GS A N LS Sbjct: 101 KLEIPSDISFATGRSDINPSLQPILDRFATGLVDNPTATVTIIGHTDSTGSDAINNPLSF 160 Query: 150 RRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 199 RA + YL +GV R+Y +G+G +P+A N AAGRA+NRRVEI V Sbjct: 161 DRASRTRDYLTGRGVAPQRIYVDGRGSHEPIASNADAAGRARNRRVEIFV 210 >gi|152982349|ref|YP_001354513.1| hypothetical protein mma_2823 [Janthinobacterium sp. Marseille] Length = 1376 Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 12/115 (10%) Query: 97 AFFDFDKATLKPAGKAKLDELVSNLKS----INLEVIIAVGHTDSIGS-------VAYNQ 145 + F KA L P+ K LD LV+ + + I I VGHTD+ G NQ Sbjct: 93 SLFVSGKADLTPSAKESLDALVAEIHARKGVIAGMRIAVVGHTDNQGLSPNAKRIFTDNQ 152 Query: 146 KLSVRRAESVKAYLVSKGVEANRVYT-EGKGKSQPVADNKTAAGRAKNRRVEIEV 199 LS RA +V AYL Y+ +GKG+SQP+A N T G ++NRRV ++V Sbjct: 153 GLSEARALTVAAYLKQALNNPAITYSIDGKGESQPLASNATPEGMSRNRRVALQV 207 >gi|152980803|ref|YP_001354158.1| peptidoglycan-associated lipoprotein [Janthinobacterium sp. Marseille] Length = 169 Score = 53.9 bits (128), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 49/100 (49%) Query: 98 FFDFDKATLKPAGKAKLDELVSNLKSINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKA 157 +FDFD +KP + ++ LKS II G+TD G YN L +RAE+V+ Sbjct: 68 YFDFDSYIVKPEFQQVVENHAKYLKSNQGRKIIIQGNTDDRGGAEYNLALGQKRAEAVRK 127 Query: 158 YLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEI 197 L GV ++ GK +P A A A+NRR +I Sbjct: 128 SLSLLGVPETQMEAVSLGKEKPKALGSDEAAWAENRRADI 167 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.127 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 314,694 Number of extensions: 9163 Number of successful extensions: 43 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 5 Length of query: 204 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 125 Effective length of database: 928,958 Effective search space: 116119750 Effective search space used: 116119750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)