BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3604.p (881 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinob... 1645 0.0 gi|152980564|ref|YP_001352396.1| DNA topoisomerase IV subunit A ... 418 e-118 >gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille] Length = 873 Score = 1645 bits (4261), Expect = 0.0, Method: Compositional matrix adjust. Identities = 789/872 (90%), Positives = 834/872 (95%) Query: 1 MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWN 60 MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMHEMNNVWN Sbjct: 1 MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWN 60 Query: 61 RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAM 120 RPFVKCARVVGE MGKYHPHGDASIYDTLVRMAQ FSLRY LVDGQGNFGSIDGD AAAM Sbjct: 61 RPFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAM 120 Query: 121 RYTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMAT 180 RYTECRLDKI+ ELLAD++KETVDFVPNYDGKEKEPSVLPTRIPNLL+NGSSGIAVGMAT Sbjct: 121 RYTECRLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180 Query: 181 NIPPHNITEVINGALHLLANEHCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGRV 240 NIPPHNITEVI+GALH+L N T+DELIE++PAPDFPTGGIIYGVSGVRDGYRTGRGRV Sbjct: 181 NIPPHNITEVIDGALHVLRNADATVDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGRV 240 Query: 241 VMRAKTHFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSG 300 VMRAKTHFEE+G+E R AIIVDELPYQVNKK+LLERIAELVRDKKL+GISD+RDESDKSG Sbjct: 241 VMRAKTHFEEFGKENRAAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSG 300 Query: 301 MRVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQLLECFLSHRRE 360 MRVVIELKR EVPEVVLNNLYKQTQLQDTFGMNMVALVDGQP+LLNLKQ+LECFLSHRRE Sbjct: 301 MRVVIELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLSHRRE 360 Query: 361 VVTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSKSWDSSMV 420 VVTRRT+FELRKARERGHVLEGLAVALANIDDFIAII+AAPTPP+AK +LMS++WDSS+V Sbjct: 361 VVTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVV 420 Query: 421 REMLARAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDK 480 REMLAR GE GG+ AFRPE+LP HYGIQ+DGLYKLSD+QAQEILQMRLQRLTGLEQDK Sbjct: 421 REMLARTGEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQMRLQRLTGLEQDK 480 Query: 481 IVNEYKDVMAQIADLLDILSKPARVTAIITDELNAAKNDFGIGAKDERRSTIEHNATDLA 540 IVNEYK+VM QIADLLDIL+KP RVT IITDEL AKN++GIG KDERRSTIE NATDL Sbjct: 481 IVNEYKEVMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSTIELNATDLG 540 Query: 541 TEDLITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDY 600 TEDLITPQDMVVTLSHTGYMK+QP+SEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDY Sbjct: 541 TEDLITPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDY 600 Query: 601 ILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDRY 660 ILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILP+SG NR+FP+D Y Sbjct: 601 ILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPISGENRTFPEDHY 660 Query: 661 VFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVR 720 +FMATSLGTVKKT LSDFSNPRKAGIIAVDLD+GDFLIGAALTDG+HDVMLFSD GKAVR Sbjct: 661 IFMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAVR 720 Query: 721 FDENDVRPMGRTARGVRGMNLEETQQVIALLVAENEQQSVLTATENGFGKRTPITEYTRH 780 FDENDVRPMGRTARGVRGMNLEE QQVIALLVAENEQQSVLTATENGFGKRTPITEYTRH Sbjct: 721 FDENDVRPMGRTARGVRGMNLEEGQQVIALLVAENEQQSVLTATENGFGKRTPITEYTRH 780 Query: 781 GRGTKGMIAIQTSERNGKVVAATLVDSSDEIMLITTGGVLIRTRVSEIREMGRATQGVTL 840 GRGTKGMIAIQTSERNGKVVAATLVD+SDEIMLITTGGVLIRTRV+EIREMGRATQGVTL Sbjct: 781 GRGTKGMIAIQTSERNGKVVAATLVDASDEIMLITTGGVLIRTRVAEIREMGRATQGVTL 840 Query: 841 IAVEDGTKLSGLQRVVESDVEDVIESEGTEAA 872 IAVEDGTKLSGLQR++ESDVE + GTE A Sbjct: 841 IAVEDGTKLSGLQRILESDVEVDDDQSGTEEA 872 >gi|152980564|ref|YP_001352396.1| DNA topoisomerase IV subunit A [Janthinobacterium sp. Marseille] Length = 771 Score = 418 bits (1075), Expect = e-118, Method: Compositional matrix adjust. Identities = 281/765 (36%), Positives = 406/765 (53%), Gaps = 96/765 (12%) Query: 11 ISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMN-NVWNRPFVKCARV 69 ++L ++YLDYA+SV+ GRALPDV DG KPV RR+L+AM+E+ N +P K A V Sbjct: 20 LTLTTFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFAMNELGLNSAAKPR-KSAAV 78 Query: 70 VGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTECRLDK 129 VG+V+GK HPHGD S+YD LVRMAQDFSLRY L+DGQGNFGS DGDGAAAMRYTE RL Sbjct: 79 VGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138 Query: 130 ISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATNIPPHNITE 189 IS LL +I+ TVDF PNYDG +EP +LP+R+P +L+NG+SGIAVGMAT IP HN+ E Sbjct: 139 ISKLLLDEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGASGIAVGMATEIPSHNLHE 198 Query: 190 VINGALHLLANEHCTIDELIELVPAPDFPTGG-IIYGVSGVRDGYRTGRGRVVMRAKTHF 248 V A+ L+ N T +EL+ +VP PDFP GG II + + D Y +GRG V +RA Sbjct: 199 VAKAAVALIRNPKLTHEELMAIVPGPDFPGGGQIITSPTAISDIYSSGRGSVKVRATWKI 258 Query: 249 EEYGREGRIAIIVDELPYQVNKKALLERIAELVRDK------------------KLEGIS 290 E+ R G+ +V ELP+ + + +LE I EL K L + Sbjct: 259 EDMAR-GQWQAVVTELPHGTSSQKVLEEIEELTNPKIKLGKKSLSPEQLALKQTVLSMLD 317 Query: 291 DLRDESDKSG-MRVVIELKRGEVPEVVLNN-LYKQTQLQDTFGMNMVAL-VDGQPRLLNL 347 +RDES + +R+V E K + N L T L+ + +N+V + DG+PR +L Sbjct: 318 TVRDESGRDAPVRLVFEPKSKNQDQTEFTNLLLAHTSLETSVSINLVMIGGDGRPRQKSL 377 Query: 348 KQLLECFLSHRREVVTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAK 407 +L ++ R +TRR+ F+L+K +R H+LEG L NID I IIR + P K Sbjct: 378 GDILREWIEFRFTTITRRSQFKLQKVDDRIHILEGREAILLNIDKVIKIIRESDEP---K 434 Query: 408 AELMSKSWDSSMVREMLARAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQ 467 LM +AFR LS+ QA +IL+ Sbjct: 435 PALM------------------------DAFR-----------------LSERQADDILE 453 Query: 468 MRLQRLTGLEQDKIVNEYKDVMAQIADLLDILSKPARVTAIITDELNAAKNDFGIGAKDE 527 +RL++L LE KI E ++ + L D+L P+ + ++ E+ A + FG D Sbjct: 454 IRLRQLARLETIKIQQELAELRNEKTTLQDLLDNPSSMKRLVIKEIEADEKQFG----DA 509 Query: 528 RRSTIEHNATDLATEDLITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQA--MATKD 585 RR+ IE A + E + + + V +S G++++ R G G A K Sbjct: 510 RRTLIE-VAEKASVETKVIDEPVTVVISQKGWVRA----------RTGHGHDAAQFTFKA 558 Query: 586 DDWIDQLFIANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVI 645 D + F T D +L F + GR+Y + V +P G+R G PI + L G +I Sbjct: 559 GDTLYNTFECRTVDSLLVFGSNGRIYSVPVSALP-GARGD-GVPITTLVELASGSRILHY 616 Query: 646 LPVSGANRSFPDDRYVFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGD-FLIGAALTD 704 + P D + +A++ G D + + G + LD+GD L +T Sbjct: 617 F-------AGPADVTLLLASTAGYGFTAKSGDMVSRTRGGKSFITLDDGDEPLAPCPVTA 669 Query: 705 GQHDVMLFSDGGKAVRFDENDVRPMGRTARGVRGMNLEETQQVIA 749 G + S+ G+ + F ++++ + RGV M+LE+ ++++A Sbjct: 670 GASAIACLSEKGRLLVFGIDEIKSLTAGGRGVILMDLEKNEKLLA 714 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,961,180 Number of extensions: 84713 Number of successful extensions: 257 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 248 Number of HSP's successfully gapped: 3 Length of query: 881 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 789 Effective length of database: 880,897 Effective search space: 695027733 Effective search space used: 695027733 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)