BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3603.p
         (370 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980749|ref|YP_001354364.1| phosphoserine aminotransferase ...   531   e-152

>gi|152980749|ref|YP_001354364.1| phosphoserine aminotransferase
           [Janthinobacterium sp. Marseille]
          Length = 363

 Score =  531 bits (1369), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 246/369 (66%), Positives = 299/369 (81%), Gaps = 9/369 (2%)

Query: 2   VYNFSAGPAVLPKEVLQQAADEMLDWHGSGMSVMEMSHRGKEYMSIIEAALADVRALMNI 61
           VYNFS GPA LP+EV++QAA+EM +W GSG+SVMEMSHRG+E+  I+    AD+R+L++I
Sbjct: 4   VYNFSPGPAALPQEVIKQAAEEMTNWRGSGLSVMEMSHRGREFTEILATTKADLRSLLSI 63

Query: 62  PSNYKVLFLQGGAIAENAIIPMNLAALRSPAGKHEAGVADYINTGSWSTKSIKEAGRYCT 121
           P NYK+L +QGGAIAENAI+PMNL        K +    D++NTG WS+K+I+EA +Y  
Sbjct: 64  PDNYKILLMQGGAIAENAIVPMNLVG-----SKAQPATIDFVNTGHWSSKTIEEAHKYAK 118

Query: 122 VNVAASSADRKFASIPARADWKLSRNAAYVHICSNETIDGVEYQYTPEVAADTDGAPLVA 181
           VN+AASS D+ F  +PAR  WKL+ +AAYVHIC+NETI GVE+ +TP+V       PLVA
Sbjct: 119 VNIAASSEDKDFTYVPARDTWKLTPDAAYVHICTNETIGGVEFDFTPDVG----NVPLVA 174

Query: 182 DMSSHILSREVDVSKYGVIYGGAQKNIGPAGVTIVIVREDLLGHALPFCPSAFDWKTVAD 241
           DMSS+ILSRE+D+SKY VIY GAQKNIGPAGVTIVIVR+D+LGHALP CPSAFDWK V +
Sbjct: 175 DMSSNILSREIDISKYAVIYAGAQKNIGPAGVTIVIVRDDMLGHALPICPSAFDWKLVDE 234

Query: 242 HDSMYNTPPTYAIYIAGLVFQWIKRQGGVVALEARNIAKAELLYGYLDSTDFYSNRIAAD 301
           HDSM+NTPPTY IYIAGL FQW+ RQGGV A+E  NIAKA+L+Y YLDSTDFY N + A 
Sbjct: 235 HDSMFNTPPTYPIYIAGLTFQWMLRQGGVAAMEQVNIAKAKLIYDYLDSTDFYVNSVPAA 294

Query: 302 CRSRMNVPFFLRDESLNDTFLAGAKERGLLQLKGHKSVGGMRASIYNAMPIEGVQALVDY 361
            RSRMNVPFFL+DESLN  F+  A  +GL+QLKGH SVGGMRASIYNAMPIEGVQALV +
Sbjct: 295 NRSRMNVPFFLKDESLNGKFITEADAQGLVQLKGHSSVGGMRASIYNAMPIEGVQALVAF 354

Query: 362 LKDFERQHG 370
           +KDFE+++G
Sbjct: 355 MKDFEKKYG 363


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 893,746
Number of extensions: 37338
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 285
Effective length of database: 906,776
Effective search space: 258431160
Effective search space used: 258431160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)