BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3602.p
         (357 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980546|ref|YP_001354363.1| bifunctional chorismate mutase ...   601   e-173

>gi|152980546|ref|YP_001354363.1| bifunctional chorismate mutase /
           prephenate dehydratase [Janthinobacterium sp. Marseille]
          Length = 358

 Score =  601 bits (1550), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 297/356 (83%), Positives = 320/356 (89%)

Query: 2   SDDKLLPLRQKIDAIDAQILDLLNQRARVAQEVGHVKAETNAPVFRPEREAQVLRRAADR 61
           +DDKL PLR++IDAIDAQILDLLN+RARVAQEVGHVKAETNAPVFRPEREAQVLR  A+R
Sbjct: 3   TDDKLKPLREQIDAIDAQILDLLNRRARVAQEVGHVKAETNAPVFRPEREAQVLRSVAER 62

Query: 62  NPGPLLGTDIQTIFREVMSACRALEKRVTVAYLGPEGTFSEQAVYQQFGHAISGLPCVSI 121
           NPGPLL TDIQT+FREVMSACRALEKRVTVAYLGP GTFSEQAVYQQFG A+  +PC SI
Sbjct: 63  NPGPLLNTDIQTVFREVMSACRALEKRVTVAYLGPVGTFSEQAVYQQFGRAVDAMPCASI 122

Query: 122 DEVFRDAEAGTADFGVVPIENSSEGVINRTLDLLLQTTLTISGEVAIPVHHSLMTASGKM 181
           DEVFR  EAGTADFGVVPIENSSEGVINRTLDLLLQTTLTISGEV+I V+HSLMT +G M
Sbjct: 123 DEVFRATEAGTADFGVVPIENSSEGVINRTLDLLLQTTLTISGEVSIQVNHSLMTRTGSM 182

Query: 182 EGITRICAHSQALAQCNAWLNMNYPAIERQAVASNAEAARMAGEDNSVAAIAGEIAGQKY 241
            G+  ICAHSQALAQC  WLN NYP IER AVASN EAAR+AGED S+AAIA EIAGQKY
Sbjct: 183 TGVKTICAHSQALAQCQVWLNQNYPNIERMAVASNGEAARLAGEDPSIAAIASEIAGQKY 242

Query: 242 SLQTVNAHIQDDPHNRTRFAVIGRLRTAPSGRDQTSIVLSVPNKAGAVYNLLAPLARHGV 301
           SLQ + AHIQDDPHNRTRFAVIGRL+TA SG+DQTS+VLSVPNKAGAVYNLLAPLA+HGV
Sbjct: 243 SLQVIKAHIQDDPHNRTRFAVIGRLQTAASGKDQTSLVLSVPNKAGAVYNLLAPLAKHGV 302

Query: 302 SMTRFESRPARMGAWEYYFYVDLEGHEQDEKVAKALEELRQNAAFFKLLGSYPLGL 357
           SMTRFESRPARMG WEYYFYVD+EGH QD KV  AL+EL+ NAAFFK+LGSYP  L
Sbjct: 303 SMTRFESRPARMGTWEYYFYVDVEGHLQDAKVENALKELKDNAAFFKVLGSYPFSL 358


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 779,342
Number of extensions: 30454
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 273
Effective length of database: 910,473
Effective search space: 248559129
Effective search space used: 248559129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)