BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3601.p
         (295 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979828|ref|YP_001354361.1| prephenate dehydrogenase [Janth...   374   e-105

>gi|152979828|ref|YP_001354361.1| prephenate dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 291

 Score =  374 bits (961), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/282 (65%), Positives = 226/282 (80%)

Query: 10  VGLIGGSFALALRRAGQVAHIVGVGRSVQSLERARELGIIDAFATDVAAAVAGADLILVA 69
           +GLIGGSFA ALR+AG V  IVGVGR+   L+RA++LGIID  +T V  A+ GADL+L+A
Sbjct: 1   MGLIGGSFARALRQAGTVEQIVGVGRTAAVLQRAKDLGIIDVASTSVEEALRGADLVLLA 60

Query: 70  APVAQTESILASIAPHLGEQAIVTDAGSTKSDVVASARKALGARIAQFIPAHPIAGREKH 129
           APVAQT  IL SI P+L    +VTDAGS K +VVA+AR  LG +IAQF+P HPIAG E +
Sbjct: 61  APVAQTAVILESIKPYLQAGTVVTDAGSIKGEVVATARAVLGDKIAQFVPGHPIAGLEAN 120

Query: 130 GPEAALAELYEGKKVVITALPENTEADVETVAAAWRACGAVIHRLSAQQHDAVFASVSHL 189
           GPEAA+ +LY GKKVV+T LPEN+ ADV  VA AW+ CGA+IH+L+A+ HDAVFA+VSHL
Sbjct: 121 GPEAAIPDLYVGKKVVLTPLPENSAADVALVAQAWQQCGAIIHQLTAENHDAVFAAVSHL 180

Query: 190 PHVLAFALVDDIAAKPHAETLFQYAASGFRDFTRIAASSPEMWRDITLANRAALLTEVDA 249
           PH+LA+ALVDDIA KPHA+ LFQYAASGFRDFTRIA SSPEMWRDI+L+N+ A+LTE+DA
Sbjct: 181 PHLLAYALVDDIANKPHADLLFQYAASGFRDFTRIAGSSPEMWRDISLSNQGAILTELDA 240

Query: 250 YLVQLQGIREMIAAGDGAAIEQVYANAQHARLQWAAAIEAAE 291
           Y+ QL   R  +AAGDG A++ ++ANAQ AR  W  +IE AE
Sbjct: 241 YIAQLTRFRAQLAAGDGEAMQAMFANAQRARQNWQRSIETAE 282


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 569,313
Number of extensions: 21297
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 212
Effective length of database: 914,170
Effective search space: 193804040
Effective search space used: 193804040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)