BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3600.p
         (443 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980294|ref|YP_001354360.1| 3-phosphoshikimate 1-carboxyvin...   731   0.0  

>gi|152980294|ref|YP_001354360.1| 3-phosphoshikimate
           1-carboxyvinyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 441

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/438 (79%), Positives = 389/438 (88%)

Query: 6   YPRHIDLAPVHHVQGTVKLPGSKSISNRILLLAALSGGTTRIFDLLASDDTLVMLMALQT 65
           YP ++DL P  H +G V+LPGSKSISNR LLLAAL+ GTT I DLLASDDT VMLMALQ 
Sbjct: 4   YPHYLDLKPAMHAKGVVRLPGSKSISNRTLLLAALAQGTTHIRDLLASDDTHVMLMALQK 63

Query: 66  LGVKWEQIEGTQDYIVHGVNGVLPVHQADLFMGNAGTAIRPLTAALAVLGGDYTLHGVPR 125
           LGVKWEQI  +QDYIVHGV+G  PVHQADLFMGNAGTAIRPLTAALAV GGDYTLHGV R
Sbjct: 64  LGVKWEQIGESQDYIVHGVDGSFPVHQADLFMGNAGTAIRPLTAALAVTGGDYTLHGVSR 123

Query: 126 MHERPIGDLVDALNAVGMRIDYTGNPGYPPLHIRRGQLTSSRMKVRGNVSSQFLTALLMA 185
           MHERPIGDLVDALNA+G  I+YTG PGYPPLHI+RG++ +  M VRGNVSSQFLTALLMA
Sbjct: 124 MHERPIGDLVDALNAIGTHIEYTGEPGYPPLHIQRGRIHAHEMSVRGNVSSQFLTALLMA 183

Query: 186 APLMARDEAMQIEVVGELISKPYIEITLNLMRRFGVEIERDGWQQFTIKPGQHYRSPGSI 245
           APLM R++ + I V+G+LISKPYIEITLNL++RFGVE++R+GWQ FTIK GQ Y SPG+I
Sbjct: 184 APLMTREQDVIINVIGDLISKPYIEITLNLIQRFGVEVQRNGWQSFTIKAGQRYISPGNI 243

Query: 246 HVEGDASSASYFLAAGAITGGPLRVEGVGRDSIQGDVRFVEALEKMGATITMGENWIEAS 305
           HVEGDASSASYFLAAGAI GGP+RVEGVGRDSIQGDVRFVEALE+MGAT+ MG+NWIEA 
Sbjct: 244 HVEGDASSASYFLAAGAIAGGPVRVEGVGRDSIQGDVRFVEALEQMGATVRMGDNWIEAE 303

Query: 306 SNGPLKAIDADFNHIPDAAMTIAVAALYADGPSTLRNIASWRVKETDRLAAMATELRKLG 365
           SNG L+AIDADFNHIPDAAMTIAVAALYADGPS LRNI SWRVKETDR++AMATELRKLG
Sbjct: 304 SNGVLRAIDADFNHIPDAAMTIAVAALYADGPSILRNIGSWRVKETDRISAMATELRKLG 363

Query: 366 AQVEEGADYLRVTPPAEIGTAAIDTYDDHRMAMCFSLAALDGALRRGNRIRINDPKCVAK 425
           A VEEG DYL+VTPPAEI +AAIDTYDDHRMAMCFSLA LDGA RRGN+ RINDP+CVAK
Sbjct: 364 AIVEEGEDYLKVTPPAEILSAAIDTYDDHRMAMCFSLATLDGAARRGNKERINDPQCVAK 423

Query: 426 TFPDYFDVFKKIAEQTLI 443
           TFP+YF+ F K+ E++L 
Sbjct: 424 TFPEYFEAFAKVTEESLF 441


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,054,830
Number of extensions: 44413
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 2
Length of query: 443
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 357
Effective length of database: 903,079
Effective search space: 322399203
Effective search space used: 322399203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)