BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3598.p
         (585 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980697|ref|YP_001354358.1| 30S ribosomal protein S1 [Janth...  1085   0.0  
gi|152981068|ref|YP_001354953.1| Tex transcriptional accessory p...    59   1e-09

>gi|152980697|ref|YP_001354358.1| 30S ribosomal protein S1
           [Janthinobacterium sp. Marseille]
          Length = 571

 Score = 1085 bits (2806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/570 (93%), Positives = 553/570 (97%), Gaps = 1/570 (0%)

Query: 17  TTTVIAAGVDTSSE-FAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIP 75
           TT V +       E FAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIP
Sbjct: 2   TTVVTSEATPVGMESFAALFEESLSRQDMRSGEVISAEVVRLDHNFVIVNAGLKSEAFIP 61

Query: 76  VEEFKNDNGEVEVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVT 135
           +EEFKNDNGE+EVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIV 
Sbjct: 62  IEEFKNDNGELEVNVGDFISVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIVV 121

Query: 136 GTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLS 195
           GTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLS
Sbjct: 122 GTVNGKVKGGLTVLTNGIRAFLPGSLVDTRPVKDTTPFEGKTLEFKVIKLDRKRNNVVLS 181

Query: 196 RRAVIEASMGEERAKLMETLKEGTVVTGVVKNITDYGAFVDLGGIDGLLHITDLAWRRVR 255
           RRAVIEASMGEER KLMETLKEGT+VTGVVKNITDYGAFVDLGGIDGLLHITDLAWRRVR
Sbjct: 182 RRAVIEASMGEERQKLMETLKEGTIVTGVVKNITDYGAFVDLGGIDGLLHITDLAWRRVR 241

Query: 256 HPSEVLSVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTD 315
           HPSEVL+VGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTD
Sbjct: 242 HPSEVLTVGQEITAKVLKYDQEKNRVSLGVKQLGDDPWTGLSRRYPQGTRLFGKVTNLTD 301

Query: 316 YGAFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQC 375
           YG+FVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQC
Sbjct: 302 YGSFVEVEQGIEGLVHVSEMDWTNKNVAPNKVVQLGDEVEVMVLEIDEERRRISLGMKQC 361

Query: 376 KPNPWDDFAMSHKKGDKVKGSIKSITDFGVFIGLPGNIDGLVHLSDLSWTEAGEEAVRKF 435
           K NPWDDFA++HKKGDKV+G+IKSITDFGVFIGL GNIDGLVHLSDLSWTE GEEAVR+F
Sbjct: 362 KANPWDDFAVTHKKGDKVRGAIKSITDFGVFIGLAGNIDGLVHLSDLSWTETGEEAVRRF 421

Query: 436 KKGDELEAVVLAIDVERERVSLGVKQLEGDPFNNFAALNDKGAIVTGTVKSVEPKGAVIQ 495
           KKGDELEA+VLAIDVERERVSLGVKQLEGDPFNNFAA+NDKGA+VTGTVKSVEPKGAVIQ
Sbjct: 422 KKGDELEAIVLAIDVERERVSLGVKQLEGDPFNNFAAMNDKGALVTGTVKSVEPKGAVIQ 481

Query: 496 LTDEVEGYLRASEISRDRVEDAGTHLKVGDSVEALVINIDRKARSIQLSIKAKDNAETQE 555
           L+DEVEGYLRASEISRDRVEDAGTHLKVGD+VEA+VIN+DRKAR IQLSIKAKDN ETQE
Sbjct: 482 LSDEVEGYLRASEISRDRVEDAGTHLKVGDTVEAMVINVDRKARGIQLSIKAKDNVETQE 541

Query: 556 AMQKMSADSNAASGTTSLGALLKAKLDNKN 585
           AMQKMS+DSNAASGTTSLGALLKAKLDNKN
Sbjct: 542 AMQKMSSDSNAASGTTSLGALLKAKLDNKN 571


>gi|152981068|ref|YP_001354953.1| Tex transcriptional accessory
           protein [Janthinobacterium sp. Marseille]
          Length = 782

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 215 LKEGTVVTGVVKNITDYGAFVDLG-GIDGLLHITDLAWRRVRHPSEVLSVGQEITAKVLK 273
           L+   ++ GVV N+  +GAFVD+G   DGL+HI+ L+   V+ P  V+  GQ +  KVL+
Sbjct: 660 LRPDMILEGVVTNVAAFGAFVDIGVHQDGLVHISALSNTFVKDPHTVVKAGQVVKVKVLE 719

Query: 274 YDQEKNRVSLGVKQLGDDPWTG 295
            D+++ R++L ++     P  G
Sbjct: 720 VDEKRKRIALTMRLSDSAPVAG 741



 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 306 LFGKVTNLTDYGAFVEVEQGIEGLVHVSEMDWTNKNVA-PNKVVQLGDEVEVMVLEIDEE 364
           L G VTN+  +GAFV++    +GLVH+S +  +N  V  P+ VV+ G  V+V VLE+DE+
Sbjct: 666 LEGVVTNVAAFGAFVDIGVHQDGLVHISAL--SNTFVKDPHTVVKAGQVVKVKVLEVDEK 723

Query: 365 RRRISLGMKQCKPNP 379
           R+RI+L M+     P
Sbjct: 724 RKRIALTMRLSDSAP 738


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,253,551
Number of extensions: 49989
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 3
Length of query: 585
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 497
Effective length of database: 895,685
Effective search space: 445155445
Effective search space used: 445155445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)