BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3597.p
         (101 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980763|ref|YP_001354357.1| integration host factor subunit...   196   2e-52
gi|152983243|ref|YP_001353224.1| DNA-binding protein HU-beta ( h...    62   5e-12
gi|152980190|ref|YP_001353183.1| integration host factor alpha-s...    62   6e-12

>gi|152980763|ref|YP_001354357.1| integration host factor subunit
           beta [Janthinobacterium sp. Marseille]
          Length = 101

 Score =  196 bits (498), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/101 (96%), Positives = 98/101 (97%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           MTKSELIARLAERYPQLVAKDADYAVKTILDAM DALATGQRIEIRGFGSFALN RPPRI
Sbjct: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPIRED 101
           GRNPKSGDKVMVPEKRVPHFKPGK+LRERVDAMVGQPI ED
Sbjct: 61  GRNPKSGDKVMVPEKRVPHFKPGKQLRERVDAMVGQPIIED 101


>gi|152983243|ref|YP_001353224.1| DNA-binding protein HU-beta (
          histone-like DNA-binding protein) [Janthinobacterium
          sp. Marseille]
          Length = 90

 Score = 62.4 bits (150), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 1  MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
          M K+ELI  +A     +    A  A+ +++ A+   L     + + GFG+F++ +R  R 
Sbjct: 1  MNKTELIDHIAG-SADISKAAAARALDSVIGAVKTTLKKNGSVTLVGFGTFSVGKRAART 59

Query: 61 GRNPKSGDKVMVPEKRVPHFKPGKELRERVD 91
          GRNP++G+ + +   +VP FKPGK L++ V+
Sbjct: 60 GRNPRTGEAIKIKAAKVPKFKPGKALKDAVN 90


>gi|152980190|ref|YP_001353183.1| integration host factor
           alpha-subunit [Janthinobacterium sp. Marseille]
          Length = 165

 Score = 62.4 bits (150), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 1/98 (1%)

Query: 1   MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
           +TK+EL   L E+   L  ++A   V+T  D + +AL  G+ +++ GFG+F L  +P R 
Sbjct: 65  LTKAELAELLFEQVG-LNKREAKDMVETFFDEIRNALERGESVKLSGFGNFQLRDKPQRP 123

Query: 61  GRNPKSGDKVMVPEKRVPHFKPGKELRERVDAMVGQPI 98
           GRNPK+G+++ +  +RV  F   ++L+  V+    QP+
Sbjct: 124 GRNPKTGEEIPITARRVVTFHASQKLKGMVEDSSQQPL 161


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 240,496
Number of extensions: 9142
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 3
Length of query: 101
Length of database: 1,221,021
Length adjustment: 69
Effective length of query: 32
Effective length of database: 965,928
Effective search space: 30909696
Effective search space used: 30909696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 122 (51.6 bits)