BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3595.p
         (391 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980764|ref|YP_001354355.1| tetratricopeptide repeat protei...   675   0.0  

>gi|152980764|ref|YP_001354355.1| tetratricopeptide repeat protein
           [Janthinobacterium sp. Marseille]
          Length = 391

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/391 (83%), Positives = 351/391 (89%)

Query: 1   MEFEFWWLLGIPVFFGLGWIAARVDINQLLSESRTLPRGYFKGLNFLLNEQPDKAIDAFI 60
           MEFE WWLL IP FF LGWIAARVDI QL+SESR+LPRGYFKGLNFLLNEQPDKAIDAFI
Sbjct: 1   MEFETWWLLAIPAFFTLGWIAARVDIKQLVSESRSLPRGYFKGLNFLLNEQPDKAIDAFI 60

Query: 61  EIVKLDPETVELHFALGNLFRRRGETERAIRVHQNLLARPDLPAEHQGHALYELGQDYLK 120
           EIVKLDPET ELHFALGNLFRRRGETERAIRVHQNLLARPDLP EH+ HA YELGQDYL 
Sbjct: 61  EIVKLDPETAELHFALGNLFRRRGETERAIRVHQNLLARPDLPLEHKVHAQYELGQDYLN 120

Query: 121 AGLLDRAEETFNKLIDTPYSAQAGRALLEIYQREKEWERAISAAEILQATGAGGRQREIA 180
           AGLLDRAEETFN+L+DT Y AQA RALLEIYQREKEWERAI AA  LQ +GAGGRQ+EIA
Sbjct: 121 AGLLDRAEETFNQLVDTQYGAQARRALLEIYQREKEWERAIQAAHALQESGAGGRQKEIA 180

Query: 181 QFYCELAADELVRTNTEAAMALLEKALAADRKSVRATMLMGDALRAKGDIEGALETWRRV 240
           QFYCELA DELV T+ +AA+ LLEKALAADRKSVRAT+L+GDA  A+GD E AL TWRRV
Sbjct: 181 QFYCELAQDELVHTHPDAAITLLEKALAADRKSVRATILLGDAQLAQGDTESALLTWRRV 240

Query: 241 EHQSVPHTALVAQRLMDGYIAVGRPQEGINLLRAYLAEAPSIDLLEVAFKAVLDADGIDA 300
           EHQSVPH ALVAQRLMDGY AVGR QEG+NLL+ YLAEA SIDLLEV FKAVL+ +G+DA
Sbjct: 241 EHQSVPHVALVAQRLMDGYRAVGRAQEGVNLLKFYLAEASSIDLLEVVFKAVLELEGVDA 300

Query: 301 ANVLVSDELRRTPTLLGLDKFLEARMMSAPQSVRPELAVVKTLVHGYTQKLARYQCSHCG 360
           AN +VSDELRRTPTLLGLDK LEAR+M AP  +R EL++VK LVHGYTQKLARYQCSHCG
Sbjct: 301 ANQMVSDELRRTPTLLGLDKLLEARLMEAPPEMRSELSLVKNLVHGYTQKLARYQCSHCG 360

Query: 361 FKARQFYWQCPGCSQWETYPPRRTEELNVMN 391
           FKARQ+YWQCPGCS+WE+YPPRRTEELNVMN
Sbjct: 361 FKARQYYWQCPGCSKWESYPPRRTEELNVMN 391


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 894,259
Number of extensions: 35225
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 306
Effective length of database: 906,776
Effective search space: 277473456
Effective search space used: 277473456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)