BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3594.p
         (459 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980151|ref|YP_001353972.1| NDP-N-acetyl-d-galactosaminuron...   123   2e-29

>gi|152980151|ref|YP_001353972.1| NDP-N-acetyl-d-galactosaminuronic
           acid dehydrogenase oxidoreductase [Janthinobacterium sp.
           Marseille]
          Length = 415

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 165/352 (46%), Gaps = 32/352 (9%)

Query: 2   KITIIGTGYVGLVTGACLAELGNDVFCLDVDQRKVDILNNGGIPIHEPGLEEVVARNRAA 61
           ++T++G GY+GL T A LA  G  V  +D++   V+ +N G I I EP L+++V    A 
Sbjct: 7   RVTVVGLGYIGLPTAAVLASTGVKVLGVDINSDAVETINRGEIHIVEPDLDKLVRDTVAN 66

Query: 62  GRLQFSTDVAASVAHGDIQFIAVGTPPDEDGSADLQYVLAAARNIGRHMEGFKVVVDKST 121
           G L+ ST    +V   D   IAV TP       D+ YV +A ++I   ++   +V+ +ST
Sbjct: 67  GNLRAST----TVEQADAFIIAVPTPFKGQHQPDISYVESATKSIAPFLKKGDLVILEST 122

Query: 122 VPVGTADRVKAAIAAELATRGKTELSFSVVSN----------PEFLKEGAAVEDFMRPDR 171
            PVGT +++   +A       + EL F    N          PE +  G  + + +  DR
Sbjct: 123 CPVGTTEKMTQWLA-----DARPELKFPSEINDDTDINLAYCPERVLPGKVLTELISNDR 177

Query: 172 IVIGHDQSPEGLRAQAQMKKLYAPFNRNHERTYWMDVRSAEFTKYAANAMLATRISFMNE 231
            VIG   S    RAQA    LY  F +        + R+AE  K   N+     I+F NE
Sbjct: 178 -VIGGITSNCSQRAQA----LYKQFVKGE--CVLTEARTAEMCKLTENSFRDVNIAFANE 230

Query: 232 LANLADRVGADIESVRHGIGSDPRIGHSFLYAGCGYGGSCFPKDVQALERTARDYDQSLL 291
           L+ + +++  ++  +       PR+  + L  G G GG C   D   +  +A +  + + 
Sbjct: 231 LSLICEKLDINVWELVRLANRHPRV--NILNPGPGVGGHCIAVDPWFIVDSAPELSKIIS 288

Query: 292 ILRAVEQVNDLQKHVLGKKVVNRFGDDLSGKHFAIWGLAFKPNTDDMREASS 343
             RA   VND  K +   + V +          A +GLAFK + DD+RE+ +
Sbjct: 289 TARA---VND-GKPLFVVEQVQKAAALYEAPTVACFGLAFKADIDDLRESPA 336


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,074,050
Number of extensions: 44926
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 373
Effective length of database: 903,079
Effective search space: 336848467
Effective search space used: 336848467
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)