BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3592.p
         (136 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982284|ref|YP_001354354.1| hypothetical protein mma_2664 [...   120   2e-29

>gi|152982284|ref|YP_001354354.1| hypothetical protein mma_2664
          [Janthinobacterium sp. Marseille]
          Length = 113

 Score =  120 bits (302), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 73/91 (80%)

Query: 1  MLKHTLLFILSFFVATGLAWAEVDVNKADQAALDGVRGIGPALSRRILEARTKEGAFKSW 60
          MLK+ LL   + F++  LAWAEVDVNKADQAALDG++G+GPA+S+ IL+ R K G FK W
Sbjct: 1  MLKNVLLAFAAMFLSMNLAWAEVDVNKADQAALDGIKGVGPAMSKAILDERKKGGNFKDW 60

Query: 61 DDLEKRVKGIKDKSAVRLSTNGLTVNGQSRS 91
          DDL+KRVKG+ +K++ +LS  GLTVNG +RS
Sbjct: 61 DDLQKRVKGVGEKNSEKLSEAGLTVNGVTRS 91


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.310    0.124    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 241,346
Number of extensions: 6831
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 62
Effective length of database: 947,443
Effective search space: 58741466
Effective search space used: 58741466
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)