BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3591.p (323 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983216|ref|YP_001352653.1| diguanylate cyclase [Janthinoba... 272 2e-74 gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [... 101 6e-23 gi|152980124|ref|YP_001353267.1| sensory box protein [Janthinoba... 97 1e-21 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 96 2e-21 gi|152982239|ref|YP_001353357.1| hypothetical protein mma_1667 [... 91 1e-19 >gi|152983216|ref|YP_001352653.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 320 Score = 272 bits (696), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 146/309 (47%), Positives = 193/309 (62%), Gaps = 1/309 (0%) Query: 9 NESARIEALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTLIDVHRQWFKSCVGLGDA 68 + S R++AL +L + + +ERFDRLTRLA+R+F+VP+A VTL+ + SC G A Sbjct: 9 DTSIRLDALRALSLFNANPDERFDRLTRLAKRVFNVPIAKVTLVGPEMVYTVSCAGEQQA 68 Query: 69 SETSRDISFCAHAILNEELTIVPDARLDVRFADNPQVTGEPFLRFYAGCPIKSEGGFNLG 128 RD+SFC+HAI ++E+ I+PD D RFADNP V +P +RFYAGCP+ G LG Sbjct: 69 P-IQRDLSFCSHAIHSDEIMIIPDTLDDGRFADNPFVVEDPRIRFYAGCPLVVMNGCRLG 127 Query: 129 TLCLVDIVPRSFDAEQQALLKDLAAMVEQELVAVRMATIDELTGVSNRRGFTTLAQHAMA 188 TLCLVD VPR E LLKDLAA VE EL A+ MA +D LTG+ NRRGF LA+ + Sbjct: 128 TLCLVDKVPRKMTQEDIILLKDLAATVEHELTAMHMAIVDALTGLVNRRGFEALAESRLN 187 Query: 189 ASKRSARAASLLYFDLNHFKQINDRFGHLEGDRALTDFARLLMDNLRESDVIGRLGGDEF 248 K ASLL+FDLN FK IND FGH EGD AL +FA L R +D++ RLGGDEF Sbjct: 188 VCKNIQGQASLLFFDLNGFKAINDTFGHAEGDLALRNFANALKLAFRSTDIVARLGGDEF 247 Query: 249 VVFLTNTALADSTVVLAHLQAAVQDFNRNGQRPYQLDYCVGVAQYDPARHPDLSALLGSA 308 V L +++ +D+ V + L+ V N +R Y+L + VG YD +++ +L Sbjct: 248 AVLLLDSSPSDTGVAVERLRGIVTAQNDREKRGYELRFSVGHVDYDGLEDVNVNRMLLDG 307 Query: 309 DAAMYERKK 317 D MY K+ Sbjct: 308 DTKMYFDKR 316 >gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille] Length = 528 Score = 101 bits (252), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 5/155 (3%) Query: 168 DELTGVSNRRGFTTLAQHAMAASKRSARAASLLYFDLNHFKQINDRFGHLEGDRALTDFA 227 D+LTG NRRG + + +A + R A + DL+ FK+IND++GH+ GD AL Sbjct: 370 DQLTGSLNRRGLDDVLEREIARADRRASPLCIAMLDLDDFKKINDKYGHMAGDEALIHLV 429 Query: 228 RLLMDNLRESDVIGRLGGDEFVVFLTNTALADSTVVLAHLQAAV--QDFNRNGQRPYQLD 285 R++ D LR DVI R GG+EF++ L +T L ++ + + LQ + Q F N R + Sbjct: 430 RVIKDTLRTMDVIARFGGEEFLIVLPDTPLEEAILTITRLQRELTKQIFMHNHTR-LLMT 488 Query: 286 YCVGVAQYDPARHPDLSALLGSADAAMYERKKASR 320 + GVA D +A++ AD A+YE KKA + Sbjct: 489 FSAGVALR--KEREDQAAMVKRADIALYEAKKAGK 521 >gi|152980124|ref|YP_001353267.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 439 Score = 97.1 bits (240), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 11/214 (5%) Query: 114 YAGCPIKSEGGFNLGTLCLVDIVPRSFDAEQ-----QALLKDLAAMVEQELVAVR---MA 165 + G P+KS+ G +G L EQ Q + +A +E++ + R MA Sbjct: 214 WLGVPLKSQKG-TIGVLVCKSYPGGICYGEQDRELLQFVSTQIATAIERQQMQARLQYMA 272 Query: 166 TIDELTGVSNRRGFTTLAQHAMAASKRSARAASLLYFDLNHFKQINDRFGHLEGDRALTD 225 D+LT + NR Q A+ ++R SLL+ DL+ FK +ND GH GD+ L + Sbjct: 273 QYDQLTTLPNRALLYDRLQVALLKARRERGCLSLLFLDLDKFKLVNDTLGHHVGDQLLQE 332 Query: 226 FARLLMDNLRESDVIGRLGGDEFVVFLTNTALADSTVVLAH-LQAAVQDFNRNGQRPYQL 284 AR L LRESD + R+GGDEFV+ L L ++A ++ A+Q + + Sbjct: 333 VARRLKQCLRESDTVARVGGDEFVILLQLIPLPQQAALVAEKIRQALQPAFNIDKHVLNI 392 Query: 285 DYCVGVAQYDPARHPDLSALLGSADAAMYERKKA 318 +G+A Y P D + LL AD AMY+ K + Sbjct: 393 VPSIGIAHY-PEHGEDEAQLLKHADQAMYQEKHS 425 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/214 (34%), Positives = 102/214 (47%), Gaps = 26/214 (12%) Query: 127 LGTLCLVDIVPRSFDAEQ-----QALLKDLAAMVEQELVAVRMATI---DELTGVSNRRG 178 +G L L + P F A Q +A VE + R+ I D LTGV+NRR Sbjct: 138 IGWLSLGSLDPTRFTANMASDFLQHRASIVAICVENVINNERLQHIGLTDPLTGVNNRRY 197 Query: 179 FTTLAQHAMAASKRSARAASLLYFDLNHFKQINDRFGHLEGDRALTDFARLLMDNLRESD 238 + ++R A S +Y DL+HFK++ND FGH GD L + A + LR SD Sbjct: 198 VERRLLEEVGRTQRHGYALSGMYIDLDHFKKVNDNFGHQGGDEVLCEVANRIKAELRLSD 257 Query: 239 VIGRLGGDEFVVFLTNTALADSTVVLAHLQAAVQDFNRNGQRPYQLD--------YCVGV 290 +GR GG+EFVV L + L + VV ++A+V +RP L +GV Sbjct: 258 ALGRFGGEEFVVLLIDAPLDAALVVAERIRASV------SERPIVLSSGEELRATVSIGV 311 Query: 291 AQYDPARHPDLSA----LLGSADAAMYERKKASR 320 A + A D +A LL AD A+Y+ KK R Sbjct: 312 ASLNTADRQDSAAVAQQLLAKADLALYQAKKEGR 345 >gi|152982239|ref|YP_001353357.1| hypothetical protein mma_1667 [Janthinobacterium sp. Marseille] Length = 283 Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 92/202 (45%), Gaps = 17/202 (8%) Query: 127 LGTLCLVDIVPRSFDAEQQALLKDLAAMVEQELVAVRMATIDELTGVSNRRGFTTLAQHA 186 LG LV + P E + LA E A A D LTG++NR F + Sbjct: 82 LGAGKLVTVPPLHLR-EADEVGTSLARASEMLHQAQHQANHDVLTGLANRALFHEIVSQQ 140 Query: 187 MAASKRSARAASLLYFDLNHFKQINDRFGHLEGDRALTDFARLLMDNLRESDVIGRLGGD 246 +A +R+ S+LY DL+ FK +ND+ GH GD+ L A L N R SDV+ RLGGD Sbjct: 141 LALCERNKTVLSILYIDLDGFKAVNDKHGHEAGDKLLRAVASRLKTNSRHSDVVARLGGD 200 Query: 247 EFVVFLTNTALADSTVVLAHLQAAVQDFNRNGQRPYQLD--------YCVGVAQYDPARH 298 EF + + + ++ V + A+ PY LD +GVA Y P Sbjct: 201 EFAMVMVGAHMENARFVAEKMVEAI-------SAPYVLDDTLTSHISASIGVATY-PESG 252 Query: 299 PDLSALLGSADAAMYERKKASR 320 ALL AD AMY+ K R Sbjct: 253 TTSEALLHRADGAMYKAKNLGR 274 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 672,237 Number of extensions: 25962 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 28 Length of query: 323 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 240 Effective length of database: 914,170 Effective search space: 219400800 Effective search space used: 219400800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)