BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3589.p
         (309 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979856|ref|YP_001354020.1| DNA polymerase III gamma and ta...   133   1e-32

>gi|152979856|ref|YP_001354020.1| DNA polymerase III gamma and tau
           subunit [Janthinobacterium sp. Marseille]
          Length = 673

 Score =  133 bits (335), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 95/131 (72%), Gaps = 2/131 (1%)

Query: 178 AELGWDGHWPTLAASLSALRGVAHQMAFQSELVRCEAL-NGGNVCFHLRIPLETLRSSGS 236
           A L WDG+WP LAA L  +RGVA Q+A QSEL++C        + F L + ++ L ++GS
Sbjct: 542 ASLNWDGNWPALAAILP-VRGVAQQLALQSELLKCGPTPESAQITFDLLVAVDVLLANGS 600

Query: 237 VDKLVAVLSERFGKEIRVETEIGAVSDTANAVAEAERAERQRKAEQKMKSDPFVVSMMRE 296
            +KL AVL E FG+ +R++T IGAV  TA+A A A+RAERQR+AEQ M+ DPFV  +MRE
Sbjct: 601 AEKLTAVLCEHFGQTVRLQTTIGAVEHTASAAAIADRAERQREAEQSMQEDPFVQKLMRE 660

Query: 297 FGATIVPGSIQ 307
           FGATIVPGS++
Sbjct: 661 FGATIVPGSVK 671


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.311    0.123    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 384,694
Number of extensions: 10118
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 226
Effective length of database: 914,170
Effective search space: 206602420
Effective search space used: 206602420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)