BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3586.p
         (198 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980835|ref|YP_001354018.1| recombination protein RecR [Jan...   347   4e-97

>gi|152980835|ref|YP_001354018.1| recombination protein RecR
           [Janthinobacterium sp. Marseille]
          Length = 198

 Score =  347 bits (889), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 161/198 (81%), Positives = 184/198 (92%)

Query: 1   LKTPSSLTLLTESLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSRSLAKALDTIRHCALC 60
           +KTPSSL  LTE+LRRLPG+GPK+AQRMAYHL+QHDRD AA L R+L++A++ ++HCA+C
Sbjct: 1   MKTPSSLDFLTEALRRLPGVGPKSAQRMAYHLMQHDRDGAAMLGRALSQAVEKVQHCAMC 60

Query: 61  NTFTEQVICDTCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPR 120
           NTFTE  +C+TC D++R+   LCVVE+P DQ+MIEQTLTFKGLYFVLMGRLSPLDGIGP+
Sbjct: 61  NTFTEHEVCETCLDAERNPALLCVVETPGDQLMIEQTLTFKGLYFVLMGRLSPLDGIGPK 120

Query: 121 DIHLEKLITRATDGVVTEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180
           DIHLEKLI+RATDG+V EVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL
Sbjct: 121 DIHLEKLISRATDGIVQEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180

Query: 181 EYVDAGTIARAMLDRRTT 198
           EYVDAGTIARAMLDRRTT
Sbjct: 181 EYVDAGTIARAMLDRRTT 198


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 370,600
Number of extensions: 13167
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 119
Effective length of database: 928,958
Effective search space: 110546002
Effective search space used: 110546002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)