BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3585.p (415 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980949|ref|YP_001354016.1| hypothetical protein mma_2326 [... 616 e-178 gi|152980831|ref|YP_001354037.1| formyl-CoA transferase [Janthin... 185 4e-48 gi|152979919|ref|YP_001352090.1| formyl-coenzyme A transferase [... 170 2e-43 gi|152980830|ref|YP_001354039.1| formyl-coenzyme A transferase [... 162 3e-41 gi|152981165|ref|YP_001352091.1| formyl-coenzyme A transferase [... 159 3e-40 >gi|152980949|ref|YP_001354016.1| hypothetical protein mma_2326 [Janthinobacterium sp. Marseille] Length = 378 Score = 616 bits (1589), Expect = e-178, Method: Compositional matrix adjust. Identities = 296/352 (84%), Positives = 320/352 (90%) Query: 9 GPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKIEAPGDGDPLRHWRVLKDGTSLWWSVQ 68 GPLAGIKVLELGTLIAGPFCSRMLAEFGA+VIKIE+P GDP+R WRVLKDGTSLWWSVQ Sbjct: 8 GPLAGIKVLELGTLIAGPFCSRMLAEFGAEVIKIESPDGGDPIRQWRVLKDGTSLWWSVQ 67 Query: 69 ARNKKSITLNMKDERAQEIARQLALDADVIIENYRPGVLEKWKLGYEDLRHLNPATIMVR 128 ARNKKS+TLN+KD R Q+IARQLAL+AD+IIENYRPGVLEKW LGYE L+ NPATIMVR Sbjct: 68 ARNKKSLTLNLKDARGQKIARQLALEADIIIENYRPGVLEKWSLGYEQLKAENPATIMVR 127 Query: 129 LSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMA 188 LSG+GQTGPL+D PGFGAIGESMGG+RYVSG PDRPP+R+GISIGDS+AALHGVIGAMMA Sbjct: 128 LSGFGQTGPLKDQPGFGAIGESMGGLRYVSGFPDRPPLRVGISIGDSVAALHGVIGAMMA 187 Query: 189 LRHRDVTGGRWNGKSGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGAL 248 LRHRD TGGRWNGKSG AGQGQM+DVALYEAVFNMMES+VPE+D+AGVVRERTGGAL Sbjct: 188 LRHRDATGGRWNGKSGDASQAGQGQMIDVALYEAVFNMMESLVPEYDYAGVVRERTGGAL 247 Query: 249 PGIVPSNTYTTGDGMNIVIAGNGDAIFKRLMSAIGRHDMANDPGLARNDGRVPRTQEIDD 308 PGIVPSNTYTTGDG NIVIAGNGDAIFKRLM A+GR D+AND LARNDGRVPRT EID Sbjct: 248 PGIVPSNTYTTGDGENIVIAGNGDAIFKRLMLAMGRDDLANDAQLARNDGRVPRTAEIDA 307 Query: 309 AIQQWCSTQTIESALARLQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQFA 360 AIQQWC TQTI SAL LQ ADVPVGKIYS++DMM+D QFLAR MFEQH F Sbjct: 308 AIQQWCDTQTIASALEILQDADVPVGKIYSIRDMMSDPQFLARKMFEQHTFC 359 >gi|152980831|ref|YP_001354037.1| formyl-CoA transferase [Janthinobacterium sp. Marseille] Length = 411 Score = 185 bits (470), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 134/429 (31%), Positives = 207/429 (48%), Gaps = 54/429 (12%) Query: 11 LAGIKVLELGTLIAGPFCSRMLAEFGADVIKIEAPGDGDPLR-HWRVLKDGTSLWWSVQA 69 LAG+++L++ + AGP S++LA GADVIK+E P GD R R + SL++ Sbjct: 5 LAGLRILDMTHVQAGPSASQLLAWMGADVIKLEPP-QGDITRGQLRDIPGVDSLYFGTLN 63 Query: 70 RNKKSITLNMKDERAQEIARQLALDADVIIENYRPGVLEKWKLGYEDLRHLNPATIMVRL 129 NK+SIT+NMK + + I L DV++EN+ PGVL+++ +E +R +NP IM + Sbjct: 64 CNKRSITVNMKTDEGKAIFADLLTKCDVLMENFGPGVLDRFGFTWERVRAINPMLIMASI 123 Query: 130 SGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMAL 189 G+G TGP D + + ++MGG +G D PP G +GDS LH VIG + AL Sbjct: 124 KGFGSTGPYSDFKAYENVAQAMGGAMATTGFSDGPPCVSGAQVGDSGTGLHFVIGILAAL 183 Query: 190 RHRDVTGGRWNGKSGADCVAGQGQMVDVALYEAVFNMM----------------ESMVPE 233 HR G+GQ V+VA+ ++V N++ E VP Sbjct: 184 HHR--------------VQYGEGQYVEVAMMDSVLNLIRMKMRDHERLQKGPLPEYSVPT 229 Query: 234 FDFAGVVR---ERTGGALPGIVPSNTYTTGDGMNIVIAGNGDAIFKRLMSAIGRHDMAND 290 V R + GG L ++ + + +V+ +A++ L +G + D Sbjct: 230 EGLFSVPRGGNDSGGGQLGNVLWCARGGAEEYLYVVVQ---EAVWPALAKLVGGQHLLED 286 Query: 291 PGLARNDGRVPRTQEIDDAIQQWCSTQTIESALARLQAADVPVGKIYSVKDMMNDAQFLA 350 P A + R Q + + + + T + L DVP G + S ++ + A Sbjct: 287 PRFANIESRRANQQAMWAILNGFAAQYTKSELMTVLNEIDVPCGPVLSTAELAENEHLHA 346 Query: 351 RDMFEQHQFAD-------GTPVKLPAITPKLSETPGQTKWLGPELGAHSDEILQS-LGYD 402 R+M+ + A G P+KL A +P + TP P LG H+DEILQ LGY+ Sbjct: 347 REMYIEVDHAQRGKYWTVGMPIKLSA-SPAVV-TP------APLLGEHTDEILQQVLGYE 398 Query: 403 EAHIKKLRD 411 E+ I +LR Sbjct: 399 ESRIAQLRS 407 >gi|152979919|ref|YP_001352090.1| formyl-coenzyme A transferase [Janthinobacterium sp. Marseille] Length = 419 Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 118/436 (27%), Positives = 200/436 (45%), Gaps = 54/436 (12%) Query: 6 SKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKIEAPGDGDPLR-HWRVLKDGTSLW 64 S+ PLAG+K+++ + AGP C+++LA FGADVIK+E PG GD R R + +L+ Sbjct: 2 SQTLPLAGVKIIDFTHVQAGPACTQLLAWFGADVIKVERPGSGDVTRSQLRDIPGKDALY 61 Query: 65 WSVQARNKKSITLNMKDERAQEIARQLALDADVIIENYRPGVLEKWKLGYEDLRHLNPAT 124 +++ NK+S+TL+ K + +E+ +L ++DV++EN+ PG L++ +E ++ LNP Sbjct: 62 FTMLNSNKRSLTLDTKTQEGKEVLEKLIKESDVMVENFGPGALDRMGFSWERVQELNPGM 121 Query: 125 IMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIG 184 IM + G+ DL + + + GG +G D PP ++GDS +H IG Sbjct: 122 IMASVKGFSDGHHYEDLKVYENVAQCAGGAASTTGFWDGPPTVSAAALGDSNTGMHLAIG 181 Query: 185 AMMALRHRDVTGGRWNGKSGADCVAGQGQMVDVALYEAVFNMMESMVPE---FDFAGVVR 241 + AL R T G+GQ V V++ +AV N+ + + D G + Sbjct: 182 ILTALMGRQKT--------------GKGQKVAVSMQDAVLNLCRVKLRDQQRLDKIGYLE 227 Query: 242 E---RTGGALPGIVP----------------SNTYTTGDGMNIVIAGNGDAIFKRLMSAI 282 E G +VP + T I G A + + A+ Sbjct: 228 EYPQYPHGKFTDVVPRGGNAGGGGQPGWVLKCKGWETDPNAYIYFTIQGHA-WAPICKAL 286 Query: 283 GRHDMANDPGLARNDGRVPRTQEIDDAIQQWCSTQTIESALARLQAADVPVGKIYSVKDM 342 G+ + DP + R + +I I+ W +T A+ L+ D+P + S+K++ Sbjct: 287 GKEEWIADPAYNTAEARQDKIFDIFATIEDWLKDKTKFEAVDILRKYDIPCAPVLSMKEL 346 Query: 343 MNDAQFLARDMFEQHQFAD--------GTPVKLPAITPKLSETPGQTKWLGPELGAHSDE 394 D + + D G+P+K + P+++ + P LG H+DE Sbjct: 347 AADKSLRESGSIVEVEHKDRGEKYLTVGSPIKFSDMKPEITGS--------PLLGEHTDE 398 Query: 395 ILQSLGYDEAHIKKLR 410 +L LGY + I L Sbjct: 399 VLAQLGYSKEQIAALH 414 >gi|152980830|ref|YP_001354039.1| formyl-coenzyme A transferase [Janthinobacterium sp. Marseille] Length = 416 Score = 162 bits (410), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 123/436 (28%), Positives = 204/436 (46%), Gaps = 53/436 (12%) Query: 10 PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKIEAPGDGDPLR-HWRVLKDGTSLWWSVQ 68 PL GIK+++ + AGP C++ LA FGADVIK+E PG GD R R + D +L++++ Sbjct: 4 PLDGIKIIDFTHVQAGPSCAQQLAWFGADVIKVERPGSGDATRTSLRDIPDADALYFTML 63 Query: 69 ARNKKSITLNMKDERAQEIARQLALDADVIIENYRPGVLEKWKLGYEDLRHLNPATIMVR 128 NK+S+TL+ K +E+ +L +D++IEN+ PG L++ +E ++ LNP I+ Sbjct: 64 NSNKRSLTLDTKKAEGKEVLEKLIRQSDIMIENFAPGALDRMGFTWEYIQSLNPRLILAS 123 Query: 129 LSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMA 188 + G+ DL + + ++ GG +G D PP G ++GDS +H IG + A Sbjct: 124 VKGFSDGHFYEDLKVYDNVAQAAGGAATTTGFWDGPPTISGAALGDSNTGMHLAIGILAA 183 Query: 189 LRHRDVTGGRWNGKSGADCVAGQGQMVDVALYEAVFNMMESMVPE---FDFAGVVRE--- 242 L+HR +T G GQ V V++ +AV N+ + + + GV+ E Sbjct: 184 LQHRHLT--------------GLGQKVAVSMQDAVLNLCRVKLRDQQRLERTGVLEEYPQ 229 Query: 243 RTGGALPGIVP----------------SNTYTTGDGMNIVIAGNGDAIFKRLMSAIGRHD 286 G +VP + I G A ++ AIG+ + Sbjct: 230 YPHGTFTDVVPRGGNAGGGGQPGWILKCKGWENDPNAYIYFTIQGTA-WEATARAIGKPE 288 Query: 287 MANDPGLARNDGRVPRTQEIDDAIQQWCSTQTIESALARLQAADVPVGKIYSVKDMMNDA 346 DP A R + +I I+ W + + A+ L+ D+P G + S+K++ D Sbjct: 289 WVTDPAYATAKARQDKIFDIFAYIETWLADKDKFEAIEILRKFDIPCGPVLSMKEIAYDE 348 Query: 347 QF-LARDMFE-QHQ-----FADGTPVKLPAITPKLSETPGQTKWLGPELGAHSDEILQSL 399 ++ + E H+ G+P+K+ T ++ TP P LG H+DE+L L Sbjct: 349 SLRRSKSIVEVDHKVRGKYLTVGSPIKMSGATVEI--TP------SPLLGEHTDEVLAEL 400 Query: 400 GYDEAHIKKLRDQGVV 415 GY+ I + V Sbjct: 401 GYNATQIAAIHSAAAV 416 >gi|152981165|ref|YP_001352091.1| formyl-coenzyme A transferase [Janthinobacterium sp. Marseille] Length = 416 Score = 159 bits (402), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 121/435 (27%), Positives = 200/435 (45%), Gaps = 54/435 (12%) Query: 11 LAGIKVLELGTLIAGPFCSRMLAEFGADVIKIEAPGDGDPLR-HWRVLKDGTSLWWSVQA 69 L+G ++L+ + +GP C+++LA FGADVIK+E G+GD R R + + SL++++ Sbjct: 5 LSGYRILDFTHVQSGPTCTQLLAWFGADVIKVERAGEGDATRGQLRDIPEADSLYFTMLN 64 Query: 70 RNKKSITLNMKDERAQEIARQLALDADVIIENYRPGVLEKWKLGYEDLRHLNPATIMVRL 129 NK+SITL+ K+ + + + L + DV++EN+ PG L++ +E + LNP I+ + Sbjct: 65 HNKRSITLDTKNPKGKAVLETLIKECDVLVENFAPGALDRMGFTWERINELNPRMIVASV 124 Query: 130 SGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMAL 189 G+G GP + + + GG +G D PP+ G IGDS LH +G + AL Sbjct: 125 KGFG-PGPYEHCKVYENVAQCAGGSASTTGFDDGPPMVTGAQIGDSGTGLHLALGILAAL 183 Query: 190 RHRDVTGGRWNGKSGADCVAGQGQMVDVALYEAVFNMMESMVPE---FDFAGVVRER--- 243 R + G+GQ V + +AV N+ + + + GV++E Sbjct: 184 LQRHAS--------------GRGQKVLAPMQDAVLNLCRVKLRDQQRLERTGVMKEYPQY 229 Query: 244 ---------------TGGALPG-IVPSNTYTTGDGMNIVIAGNGDAIFKRLMSAIGRHDM 287 +GG PG I+ + T I G A++ + IG+ + Sbjct: 230 PDTPFGDSVPRAGNASGGGQPGSILKCKGWETDPNAYIYFIAQG-AVWAPICKVIGKEEW 288 Query: 288 ANDPGLARNDGRVPRTQEIDDAIQQWCSTQTIESALARLQAADVPVGKIYSVKDMMNDAQ 347 DP A R+P + I +++W T T A+ L D+P G I S+K++ + Sbjct: 289 LTDPEYATPASRLPHLKNIFATVEEWTKTMTKFEAMDILNKFDIPCGPILSMKEIAEEPS 348 Query: 348 FLARDMFEQ-------HQFADGTPVKLPAITPKLSETPGQTKWLGPELGAHSDEILQSLG 400 + G P+ KLS++P P LG H++E+L LG Sbjct: 349 LRETGTIVEVDHPVRGKYLTVGNPI-------KLSDSPTDVT-RSPLLGEHTEEVLGQLG 400 Query: 401 YDEAHIKKLRDQGVV 415 Y I LR + V+ Sbjct: 401 YSAEDIAALRAERVI 415 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,115,379 Number of extensions: 52530 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 5 Length of query: 415 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 329 Effective length of database: 903,079 Effective search space: 297112991 Effective search space used: 297112991 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)