BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3583.p (269 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 189 1e-49 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 189 1e-49 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 171 6e-44 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 163 8e-42 gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 161 4e-41 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 189 bits (481), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 100/224 (44%), Positives = 141/224 (62%), Gaps = 2/224 (0%) Query: 27 VANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSSGSVKVFGEPLNGINRRAGYMF 86 + + L I GEFV++VG +G GKSTLL AGL+ PSSG V++ L G RRA +F Sbjct: 22 IQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDVQLKLPQLPGRRRRA-VVF 80 Query: 87 QAEALMPWRSALQNVIAGLQYRGQDEKSAEELGQQWLARVGLQGFGDRYPHQLSGGMRKR 146 Q L+PWR+ NV GL+ G + +Q L GL FG+R+PHQLSGG +R Sbjct: 81 QDGRLLPWRTVADNVAYGLETLGISADEQQSRIKQALQLTGLAEFGERWPHQLSGGQVQR 140 Query: 147 VALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLELWNAKKKAVLFITHDLDEAIAMS 206 V +A+ L + PD++LMDEPFSA+D TR+ ++ E++ +W A + AV+F+THD+DEA+ ++ Sbjct: 141 VGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQSAVMFVTHDIDEAVFLA 200 Query: 207 DRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHPRFVELHQQI 250 DRVIVL P T + RIDLPRPR +++ L Q+ Sbjct: 201 DRVIVLGGSPAT-VVENLRIDLPRPRVRSDVAFAEYVAHLSTQL 243 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 189 bits (481), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 100/256 (39%), Positives = 150/256 (58%), Gaps = 8/256 (3%) Query: 3 PALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQ 62 PA+ ++ F Q A+ +L I GEFV ++G +GCGKSTLL + AG Sbjct: 12 PAIDIKGVSKVF---SIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFET 68 Query: 63 PSSGSVKVFGEPLNGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGQDEKSAEELGQQW 122 SSGS ++G P++G + G +FQ L PW + +N+ G + R + EEL + Sbjct: 69 TSSGSANMYGMPIDGPSPERGMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYY 128 Query: 123 LARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVL 182 VGL F + YP QLSGGM++RVA+A+ L D +++LMDEPF ALD TR+ ++ ++L Sbjct: 129 TDMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLL 188 Query: 183 ELWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHPR 242 E+W K V+F+TH ++EA+ +SDRV+V+ AGPG + ++DL RPRD+ + Sbjct: 189 EIWERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIE-EDIKLDLARPRDITAV----E 243 Query: 243 FVELHQQIWDVLRDEV 258 F E+ + I L V Sbjct: 244 FNEIRRDITQYLTSHV 259 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 171 bits (432), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 143/239 (59%), Gaps = 8/239 (3%) Query: 5 LQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPS 64 ++ + +F + D + + D + GE V+++G +G GKSTLL + AGL+ Sbjct: 7 IELKGVDKSFQTADGTPS--SVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPAD 64 Query: 65 SGSVKVFGEPLNGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGQDEKSAEELGQQWLA 124 SGS G+ + G +FQ+ AL PW + QNV GL+ +G E+ L Sbjct: 65 SGSAMYRGKNIYGPVAGIAMVFQSFALFPWLTVQQNVELGLEAQGVPPAEREKRADAMLD 124 Query: 125 RVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLEL 184 +GL GFG P +LSGGM++RV +A+ L+ PD++LMDE FSALD+ T + + +++LE+ Sbjct: 125 LIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEM 184 Query: 185 WNAKK---KAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPR--DVAEIR 238 W + K +L ++H+++EA+ MSDR++VL++ PG E +IDLPRPR D AE+R Sbjct: 185 WEENRIPTKGILIVSHNIEEAVMMSDRIVVLSSSPG-RIRSEIKIDLPRPRNPDSAEVR 242 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 163 bits (413), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 147/253 (58%), Gaps = 5/253 (1%) Query: 6 QFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSS 65 +F +I +S + + A+ N +L ++ GEF++++G +GCGKSTLLN+ AGL Q + Sbjct: 7 KFIDIQHAEMSFSTKKGIFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATG 66 Query: 66 GSVKVFGEPLNGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGQDEKSAEELGQQW--- 122 G + + G + +FQ +L+PW + +NV ++ +S EL + Sbjct: 67 GMLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFSATESKAELKARTRAA 126 Query: 123 LARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVL 182 LA VGL + P+++SGGM++RV +A+ L ++P ++LMDEPF ALD TR +++E+L Sbjct: 127 LALVGLSHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELL 186 Query: 183 ELWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGE-FRIDLPRPRDVAEIRMHP 241 ++ A V+ +THD+DEA+ +SDR+++L GP IGE + L RPR+ + P Sbjct: 187 KIVAATGSTVVMVTHDVDEAVLLSDRIVMLTNGPSA-TIGEILEVKLARPRERVMLAQDP 245 Query: 242 RFVELHQQIWDVL 254 + + + + L Sbjct: 246 LYSQYRTAVLEFL 258 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 161 bits (407), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 88/217 (40%), Positives = 136/217 (62%), Gaps = 5/217 (2%) Query: 3 PALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQ 62 P LQ D+++ + +++ R R T + D+ A FV ++GP+GCGKSTLL AG + Sbjct: 38 PLLQVDDVSLEYRTRE-RVVRATHRVSFDVHQA-DRFV-LLGPSGCGKSTLLKAVAGFIL 94 Query: 63 PSSGSVKVFGEPLNGINRRAGYMFQA-EALMPWRSALQNVIAGL-QYRGQDEKSAEELGQ 120 P G +++ G+ + +FQ + L PW++ QNVI L R K AEE Sbjct: 95 PVEGEIRLDGKAVTAPGPDRIVVFQEFDQLSPWKTVKQNVIFPLLASRTLGRKEAEERAL 154 Query: 121 QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENE 180 +LA+VGL F D +PHQLSGGM++RVA+A+ L + P ++LMDEPF+ALD TR+ M+ E Sbjct: 155 HYLAKVGLSKFSDVHPHQLSGGMKQRVAIARALAMQPRVLLMDEPFAALDALTRRKMQEE 214 Query: 181 VLELWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPG 217 +L+LW+ +LF+TH ++EA+ + +R+ +L+ PG Sbjct: 215 LLQLWDEVHFTLLFVTHSIEEALVVGNRIALLSPHPG 251 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 645,843 Number of extensions: 27560 Number of successful extensions: 265 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 64 Length of query: 269 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 187 Effective length of database: 917,867 Effective search space: 171641129 Effective search space used: 171641129 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)