BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3580.p (523 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 374 e-105 gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis pro... 353 1e-98 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 352 3e-98 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 352 4e-98 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 352 4e-98 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 374 bits (960), Expect = e-105, Method: Compositional matrix adjust. Identities = 256/522 (49%), Positives = 340/522 (65%), Gaps = 20/522 (3%) Query: 3 FRRLKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRAAV 62 F +KV S+L LGFG LL L+I AL++++QID +++ ++ ++++L R A+ Sbjct: 2 FANMKVGSKLSLGFGVTALLTLLIAVFALMRINQIDGVIATQNEIRTQQLERLYTAREAL 61 Query: 63 FEQSLASRGILMSTTSEELKQYADLLPQQISIYSEAEKTLAKMFAEAPDTTDTEKKAIIL 122 + LA+R + T + + D+L +Q +IY +A LAKM + EK + L Sbjct: 62 GQTGLAARNAYIFTNKADALKELDILDEQKAIYLDA---LAKMTPFFKGDANFEKVSKGL 118 Query: 123 IQQQSAEVLPRLQQLIKAVRDNDS-DAIKAVLA--ASPLSRLQAQRRATLAELARFEDKL 179 + AE L R +Q RD D +A L SPL R Q A + + K+ Sbjct: 119 LTM--AEELKRPRQF----RDADQMEAFGKFLVNECSPLRR---QIVADIGTVVTSMQKI 169 Query: 180 NGEARDDAKALYKTARRLIVTLGVLALLLGMVSAILIIRSVVKQLGGEPADAAELASLIA 239 +A + + +I+ + +ALLL + I+I RS+ + L +A +A +A Sbjct: 170 VDVKSQEANLAAQQSITIIIAISAVALLLSIGLGIVISRSITRPLN----EAVLVAQTVA 225 Query: 240 KGDLRREVNVASAD-PASLMMSMKSMNTALRDIVREVRAGTDAITTASTEIAAGNLDLSS 298 GDL ++NV S D L+ ++K MN +L IV EVR+GT + TAS +IA+GN+DLSS Sbjct: 226 SGDLTSQINVKSKDETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSS 285 Query: 299 RTEEQASSLEQTASAMEQLVATVKNNADSAGQANQLAEQASAVASESGQLVQEVVSTMAA 358 RTEEQASSLE+TAS+ME+L +TVK NAD+A QAN L+ AS +A + GQ+V EVV TM Sbjct: 286 RTEEQASSLEETASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNG 345 Query: 359 IDASSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSTA 418 I+ S+KKI DII VIDGI+FQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS+ A Sbjct: 346 INDSAKKITDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAA 405 Query: 419 AREIKALIDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVIGAISAASSEQSKGIDEI 478 A+EIKALIDDSV +V TGS LV QAG TM EVV SV+RV ++ I AAS EQS GI+++ Sbjct: 406 AKEIKALIDDSVGRVDTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQV 465 Query: 479 NHAIAQMDQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVF 520 N AIAQMD VTQQNAALVE+AAAA+ SL+ QA KL V VF Sbjct: 466 NQAIAQMDHVTQQNAALVEEAAAAAGSLKDQAVKLEQTVSVF 507 >gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 573 Score = 353 bits (907), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 247/528 (46%), Positives = 335/528 (63%), Gaps = 25/528 (4%) Query: 1 MDFRRLKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRA 60 M F LK+ +RL +GF VL L+ + + + M I ++L++I D N ++ L M Sbjct: 1 MKFSNLKIGTRLTIGFFLVLALMAALTACGVNGMQNIQKRLNTIIDDNVHKMNLLQDMSE 60 Query: 61 AVF--EQSLASRGILMSTTSE---ELKQYADLLPQQISIYSEAEKTLAKMFAEAPDTTDT 115 +V S+ + +LM SE E+K+ D + Y A L K A + Sbjct: 61 SVHIVSHSMGTL-VLMRNESEMVLEIKKVVDARSK----YDAAILVLEKKPALEVERVLR 115 Query: 116 EKKAIILIQQQSAEVLPRLQQLIKAVRDNDSDAIKAVL--AASPLSRLQAQRRATLAELA 173 EK I Q A V+ Q+I+ R N + A+L A PL++ Q +L Sbjct: 116 EK---IKGAQADARVVN--DQIIEFARGNKDEEASALLIKTAEPLNQAWQQALDQSIQLQ 170 Query: 174 RFEDKLNGEARDDAKALYKTARRLIVTLGVLALLLGMVSAILIIRSVVKQLGGEPADAAE 233 + ++ + A A A Y+ ++ + L +AL+LG+V A +I RS+ + + A Sbjct: 171 KHANEADAVA---ATATYENSQLYMGALSGVALILGIVIAWVITRSISRPI----ISAMN 223 Query: 234 LASLIAKGDLRREVNVASADPAS-LMMSMKSMNTALRDIVREVRAGTDAITTASTEIAAG 292 +A+ +A GDL + + +AD + L+ ++K MN L IV +VR GT+ I TAS EIA G Sbjct: 224 VANTVALGDLTSHIEITTADESGQLLHALKDMNDNLVSIVTQVRHGTETIATASAEIATG 283 Query: 293 NLDLSSRTEEQASSLEQTASAMEQLVATVKNNADSAGQANQLAEQASAVASESGQLVQEV 352 NLDLS+RTEEQASSLEQTAS+ME+L +TVK+N D+A QAN+LA AS AS G +V +V Sbjct: 284 NLDLSARTEEQASSLEQTASSMEELTSTVKHNFDNARQANKLALNASDAASRGGVVVAQV 343 Query: 353 VSTMAAIDASSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 412 V TM I+ SS+KI DII VIDGI+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LA Sbjct: 344 VETMGFINGSSRKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLA 403 Query: 413 QRSSTAAREIKALIDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVIGAISAASSEQS 472 QRSS AA++I+ LI SV K+ GS LV +AG+TM E+V SV++V S++ I+AAS EQS Sbjct: 404 QRSSAAAKDIRILIGSSVQKIDAGSLLVEEAGRTMKEIVISVQQVTSIMAEITAASEEQS 463 Query: 473 KGIDEINHAIAQMDQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVF 520 GI+++N AIAQMDQVTQQNAALVE+AAAA+ SL+ QA LS VV VF Sbjct: 464 AGIEQVNQAIAQMDQVTQQNAALVEEAAAAAASLREQAENLSKVVRVF 511 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 352 bits (903), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 236/521 (45%), Positives = 332/521 (63%), Gaps = 15/521 (2%) Query: 3 FRRLKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRAAV 62 + LK+ RL L FGS+++LL+++ ++A ++ ++ +S + + ++M+ + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 63 FEQSLASRGILMSTTSEELKQYADLLPQQISIYSEAEKTLAKMFAEAPDTTDTEK--KAI 120 + + R L+ T ++ +++ +A +L E T +E+ + I Sbjct: 61 NQIARNMRNALLMTEKAAIQA-------ELTQIGKATDSLNNALVELEKTVRSERGRQTI 113 Query: 121 ILIQQQSAEVLPRLQQLIKAVRDNDSDAIKAVLAASPLSRLQAQRRATLAELARFEDKLN 180 +Q ++ LP IK D A+L A + Q A++ +L ++++L Sbjct: 114 AGLQADRSKFLPLKDDFIKLASAGIKDEAVALLFAE-VRPAQLSYLASIDKLIDYQNELM 172 Query: 181 GEARDDAKALYKTARRLIVTLGVLALLLGMVSAILIIRSVVKQLGGEPADAAELASLIAK 240 ++ +A A + LI ++A+L+ V A+L RS+ + L + A LA +A Sbjct: 173 KKSGAEANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPL----SQAVVLARKVAD 228 Query: 241 GDLRREVNVASAD-PASLMMSMKSMNTALRDIVREVRAGTDAITTASTEIAAGNLDLSSR 299 GDL + V S D L+ ++K MN L IV +VR GTD I +AS +IA GNLDLSSR Sbjct: 229 GDLTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSR 288 Query: 300 TEEQASSLEQTASAMEQLVATVKNNADSAGQANQLAEQASAVASESGQLVQEVVSTMAAI 359 TE+QASSLE+TAS+ME+L +TVK NA++A Q+NQLA AS VA G +V +VV TM I Sbjct: 289 TEQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEI 348 Query: 360 DASSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSTAA 419 + S+KKIVDII VIDGI+FQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRS++AA Sbjct: 349 NDSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAA 408 Query: 420 REIKALIDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVIGAISAASSEQSKGIDEIN 479 +EIK LI DSVDKV+ GS LV+ AG TM EVV SV+RV ++ I+AAS EQ+ GI++IN Sbjct: 409 KEIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQIN 468 Query: 480 HAIAQMDQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVF 520 A+ QMDQVTQQNAALVE+AAAA++SLQ QA LS VV VF Sbjct: 469 QAVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVF 509 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 352 bits (902), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 244/548 (44%), Positives = 336/548 (61%), Gaps = 69/548 (12%) Query: 3 FRRLKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRAAV 62 F +K+ +RLMLGFG VL L + I + D I +QL +++ + S++ + Sbjct: 4 FSNMKIGARLMLGFGVVLALSIAIAA------DGI-RQLHAVSAITR------SMLELPI 50 Query: 63 FEQSLASRGILMSTTSEELKQYADLLPQQISIYSEAEKTLAKMFAE-APDTTDTEKKAII 121 ++ + S ++ S + + I + A+ LA+ A+ A D + Sbjct: 51 AKERMVSDWAAITKAS---------IARTIGVAKSADPALAQFSAKFAADDS-------- 93 Query: 122 LIQQQSAEVLPRLQQLIKAVRDNDS-----DAIKAVLAA-SPLSRLQAQRRATLAELARF 175 +QS E++ +L+ L+ ++ + D K+ LA + +L+ + + AE A++ Sbjct: 94 ---KQSMEIIQKLEPLLNTDQEKELYAKILDVRKSFLAGREGVMKLKTEGKE--AEAAKY 148 Query: 176 EDKLNGEARDDAKALYK-------------TAR---------RLIVTLGVLALLLGMVSA 213 D A D K + TA+ R ++ L + L G+ A Sbjct: 149 FDTTFLPAADSFKNHFTEFVELERKQMDAGTAQLSDVEAASTRQLMLLSAMVLAFGIFCA 208 Query: 214 ILIIRSVVKQLGGEPADAAELASLIAKGDLRREVNVASADPAS-LMMSMKSMNTALRDIV 272 + + + L A + A +A GDL ++ S D L+ ++K MN L+ IV Sbjct: 209 WRLTIGITRPL----KTAVDAARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIV 264 Query: 273 REVRAGTDAITTASTEIAAGNLDLSSRTEEQASSLEQTASAMEQLVATVKNNADSAGQAN 332 EVR GT+ ITTAS EIAAGNLDLSSRTE+QASSLE+TAS+ME+L +TVK NAD+A QAN Sbjct: 265 GEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQAN 324 Query: 333 QLAEQASAVASESGQLVQEVVSTMAAIDASSKKIVDIISVIDGISFQTNILALNAAVEAA 392 QLA AS VA + G +V +VV TM++I+ SS+KIVDIISVIDGI+FQTNILALNAAVEAA Sbjct: 325 QLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAA 384 Query: 393 RAGEQGRGFAVVASEVRSLAQRSSTAAREIKALIDDSVDKVATGSALVNQAGQTMHEVVT 452 RAGEQGRGFAVVA+EVRSLAQRS++AA+EIKALI DSV KV TG+ LV +AG TM E+V Sbjct: 385 RAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVN 444 Query: 453 SVERVVSVIGAISAASSEQSKGIDEINHAIAQMDQVTQQNAALVEQAAAASQSLQAQARK 512 S+ RV ++G I+AAS EQS GI++IN AI QMD VTQQNA+LVE+AAAA++S+Q QARK Sbjct: 445 SIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARK 504 Query: 513 LSGVVEVF 520 L VV F Sbjct: 505 LGQVVGAF 512 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 352 bits (902), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 244/535 (45%), Positives = 331/535 (61%), Gaps = 43/535 (8%) Query: 3 FRRLKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRAAV 62 + LK+ RL L FGSV+ +L+++ +A ++D++D + +++ + I++ + Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 63 FEQSLASRGILMSTTSEELKQYADLLPQ------------QISIYSEAEKTLAKMFAEAP 110 E + R L+ T + ++K D + + +I SE +T K +A Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 111 DT-TDTEKKAIILIQQQ---SAEVLPRLQQLIKAVRDNDSDAIKAVLAASPLSRLQAQRR 166 T + K + L+ Q A++L L VR P Q + Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQIL-----LFAEVR--------------PA---QLEYM 158 Query: 167 ATLAELARFEDKLNGEARDDAKALYKTARRLIVTLGVLALLLGMVSAILIIRSVVKQLGG 226 L L F+ L +A +DA + A++L+ L V+A+++ L RS+ + L Sbjct: 159 LGLDRLVEFQSNLMHKAGEDAHEVSANAQQLVGILSVIAVIISAFLGFLATRSITRPL-- 216 Query: 227 EPADAAELASLIAKGDLRREVNVASAD-PASLMMSMKSMNTALRDIVREVRAGTDAITTA 285 + A LA +A GDL + V S D L+ +++ MN L IV +VR GTD I TA Sbjct: 217 --SQAVGLARKVADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATA 274 Query: 286 STEIAAGNLDLSSRTEEQASSLEQTASAMEQLVATVKNNADSAGQANQLAEQASAVASES 345 S++IA GNLDLSSRTEEQASSLE+TAS+ME+L +TVK NAD+A Q+NQLA AS VA Sbjct: 275 SSQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRG 334 Query: 346 GQLVQEVVSTMAAIDASSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVA 405 G +V +VV TM +I+ S+ KIVDII VIDGI+FQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 335 GAVVSQVVETMGSINDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 394 Query: 406 SEVRSLAQRSSTAAREIKALIDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVIGAIS 465 SEVR+LAQRS++AA+EIK LIDDSV+KV GS LV+ AG TM EVV SV RV ++G I+ Sbjct: 395 SEVRNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEIT 454 Query: 466 AASSEQSKGIDEINHAIAQMDQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVF 520 AAS EQ+ GI++IN A+ QMDQVTQQNAALVE+AAAA++SLQ QA LS VV VF Sbjct: 455 AASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVF 509 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.124 0.306 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 678,732 Number of extensions: 19667 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 21 Length of query: 523 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 435 Effective length of database: 895,685 Effective search space: 389622975 Effective search space used: 389622975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)