BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3576.p
         (429 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980865|ref|YP_001353847.1| hypothetical protein mma_2157 [...   241   6e-65
gi|152980133|ref|YP_001353090.1| cystathionine beta-lyase [Janth...   132   4e-32

>gi|152980865|ref|YP_001353847.1| hypothetical protein mma_2157
           [Janthinobacterium sp. Marseille]
          Length = 413

 Score =  241 bits (615), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 144/428 (33%), Positives = 227/428 (53%), Gaps = 15/428 (3%)

Query: 1   MADNPQWKFETVSVHGGYDPDPTTRAVAVPIYQTVAFAFDDTQHGADLFDLKVQGNIYSR 60
           M D+ ++ F T ++H          ++  PI+ +V F ++D +  A +F  K  G  Y R
Sbjct: 1   MTDSKKYGFTTTTLHSDRQKAIEHGSLHKPIHTSVTFGYNDARELATVFQGKKPGYRYGR 60

Query: 61  IMNPTQDVLEKRLAALEGGIAALALASGQAAVTYAIQTIAEAGDNIVSASTLYGGTYNLF 120
             NPT   LE ++  +E G++ +  A+G AA+   +Q +   GD++VS++ L+G T +L+
Sbjct: 61  QGNPTVAALEDKVNKMEEGLSTICFATGMAAIGAVVQALLREGDHVVSSAFLFGNTNSLW 120

Query: 121 AHTLPQFGIQTRFADPRQPASFEPLIDARTKAIYIESIGNPLGNVTDIAAVAEIAHRHGV 180
             T+   G+Q    D     + E  I   T  +++E+I NP   V D+A + ++    G+
Sbjct: 121 -QTVGGQGVQIAMVDATDVKNVEAAIQPNTCIVFVETIANPRTQVADLARIGKLCAERGI 179

Query: 181 PLIVDNTVATPYLLRPFEHGADIVVHSLTKYLGGHGTTLGGAIVDSGKFPWAQHKERFKR 240
             +VDNT+ +PYL RP   GA IV+++LTK +GGHG  LGG++ D+G + WA    RF  
Sbjct: 180 LYVVDNTMTSPYLFRPKTVGASIVINALTKSIGGHGNALGGSLTDTGLYDWA----RFPN 235

Query: 241 LNEPDVSYHGVVYTEALGEAAYIGRARVVPLRNTGAALSPFNAFQILQGIETLALRLDRI 300
           + E    Y    +  A        + R   LR+ G +L P  A  +  G ET+ALRLDR 
Sbjct: 236 ILETYKRYPTAQWGMA--------QIRAKALRDFGGSLGPEAAHHLAVGAETMALRLDRE 287

Query: 301 TANTLAVAQYLKRHPKVRWVNYAGLEDHPDHALAQKYFKGRASGVLTFGVANGRDGGARF 360
            AN LAVAQ L+   +V  V Y GL+ HP HA++ + F+   S + +F + +G D    +
Sbjct: 288 CANALAVAQMLEADERVAAVYYPGLKSHPQHAISTELFRAYGS-LFSFELKDGID-CFDY 345

Query: 361 QDALQLFTRLVNIGDAKSLATHPASTTHRQLSPGELEKAGVTEDTVRLSIGIEHIDDLLA 420
            + LQL     N+GD ++L    A T   ++        G+ E  +R+SIGIE   DL+ 
Sbjct: 346 LNRLQLGVSASNLGDTRTLVIPVAHTIFYEMGAERRASMGIAESLIRVSIGIEDTADLVE 405

Query: 421 DLEQALQS 428
           D  QAL +
Sbjct: 406 DFRQALDA 413


>gi|152980133|ref|YP_001353090.1| cystathionine beta-lyase
           [Janthinobacterium sp. Marseille]
          Length = 380

 Score =  132 bits (332), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 170/368 (46%), Gaps = 45/368 (12%)

Query: 64  PTQDVLEKRLAALEGGIAALALASGQAAVTYAIQTIAEAGDNIVSASTLYGGTYNLFAHT 123
           PT   LE RLAA+E G   +   SG AA+        ++GD+++    +Y     L    
Sbjct: 52  PTTFTLEARLAAIEDGKHCVLAPSGLAAIALVDFAFLKSGDDVLIPDNVYNPNRELANWL 111

Query: 124 LPQFGIQTRFADPRQPASFEPLIDARTKAIYIESIGNPLGNVTDIAAVAEIAHRHGVPLI 183
              FGI  R+ DP   +    LI   T+ I+ E+ G+    V D+ A+ + AH  GV + 
Sbjct: 112 QQDFGITARYYDPLIGSGISGLIQPNTRLIWTEAPGSVSMEVPDLPAICQAAHAKGVLVA 171

Query: 184 VDNTVATPYLLRPFEHGADIVVHSLTKYLGGHGTTLGGAIVDSGKFPWAQHKERFKRLNE 243
           +DNT A    LR FE G DI++ +LTKY  G    L GA++        Q K   +RL  
Sbjct: 172 LDNTWAAGLALRGFELGVDIIMQALTKYQSGGSDVLMGAVI-------TQDKALNQRL-- 222

Query: 244 PDVSYHGVVYTEALGEAAYIGRARVVPLRNTGAALSPFNAFQILQGIETLALRLDRITAN 303
                          E A++           G  ++  + + +L+ + T+ LR +   A 
Sbjct: 223 ---------------ETAHM---------RLGFGVAADDVYLVLRSLPTMKLRFEAHDAA 258

Query: 304 TLAVAQYLKRHPKVRWVNYAGLEDHPDHALAQKYFKGRASGVLTFGVANGRDGGA---RF 360
              VA +L+  P++  V +  L + P HA+ Q+ F G A G+ +  V + R   A   RF
Sbjct: 259 ARTVAAWLQARPEIAAVLHPALPECPGHAIWQRDFSG-AGGLFSV-VFDPRYSEAQTDRF 316

Query: 361 QDALQLFTRLVNIGDAKSLATHPASTTHRQLSPGELEKAGVTEDTVRLSIGIEHIDDLLA 420
            D+LQLF    + G   SLA  P    H +   G     G     VRL+IG+E   DL+A
Sbjct: 317 VDSLQLFKIGFSWGGVHSLAV-PYRMQHMR---GNWPHQG---QLVRLNIGLEDPQDLIA 369

Query: 421 DLEQALQS 428
           D+EQA ++
Sbjct: 370 DIEQAFKA 377


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,012,982
Number of extensions: 43139
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 3
Length of query: 429
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 343
Effective length of database: 903,079
Effective search space: 309756097
Effective search space used: 309756097
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)