BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3572.p
         (208 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980210|ref|YP_001354123.1| riboflavin synthase subunit alp...   306   6e-85

>gi|152980210|ref|YP_001354123.1| riboflavin synthase subunit alpha
           [Janthinobacterium sp. Marseille]
          Length = 203

 Score =  306 bits (784), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 157/203 (77%), Positives = 172/203 (84%), Gaps = 1/203 (0%)

Query: 1   MFTGIVAAIGTITSVTPLAAGPDAGVRLNIDAGTLPMADVSLGDSIALNGACMTVVEKTA 60
           MFTGIVAAIG IT +TPL    +AG RL +DAG LP+ADV+LGDSI LNGACMTVV KT 
Sbjct: 1   MFTGIVAAIGKITHITPLG-DAEAGHRLTVDAGGLPLADVALGDSITLNGACMTVVAKTD 59

Query: 61  QGFTVDVSRESLRLTAGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGLVHSFEPVGES 120
           + F VDVSRESL  TAGLDA GEVNLEKA+TL+ERLGGHLVSGHVDGLG+V  FEPVGES
Sbjct: 60  KQFDVDVSRESLNCTAGLDAIGEVNLEKAVTLSERLGGHLVSGHVDGLGVVSKFEPVGES 119

Query: 121 RELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKHLQ 180
             L V APK LGK++A KGSIV+NGVSLTVN V D A+ C FS+NLIPHTV+VTTLKHLQ
Sbjct: 120 WLLAVTAPKELGKFIAVKGSIVINGVSLTVNTVVDSANGCTFSVNLIPHTVQVTTLKHLQ 179

Query: 181 AGSKVNLEIDLIARYVERMLSSS 203
           AGSKVNLEIDLIARYVERMLS S
Sbjct: 180 AGSKVNLEIDLIARYVERMLSQS 202


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 467,400
Number of extensions: 19410
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 129
Effective length of database: 928,958
Effective search space: 119835582
Effective search space used: 119835582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)