BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3569.p
         (151 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980811|ref|YP_001354126.1| PilE type IV pilus assembly pro...   111   2e-26

>gi|152980811|ref|YP_001354126.1| PilE type IV pilus assembly
           protein [Janthinobacterium sp. Marseille]
          Length = 134

 Score =  111 bits (278), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 81/134 (60%), Gaps = 3/134 (2%)

Query: 21  LVSLAIVILLAGLGWNGYRHVAQKASRAEGRAAILQVLLQQERHYAYQHRYKAFQ--PGV 78
           +V+L IV LLA L    Y++   K+ RAEGRAA+++++ QQER+Y+    Y  F    G 
Sbjct: 1   MVALLIVALLATLAIPSYQNAVIKSKRAEGRAALMRLMQQQERYYSVHTTYLPFSATSGD 60

Query: 79  E-AHGFKWYSGATPQTSAYALSARACEGEDLSSCVLVSAAPGGTGVNAGYQDEACGVLYA 137
           E A  F WYSG + Q+S+Y +SA AC+   +  C+ + A PG   V+A Y+D  CG L  
Sbjct: 61  EHARQFSWYSGTSEQSSSYEISAEACDSSGIRHCIRLMARPGTDRVDASYRDFMCGTLTL 120

Query: 138 DSRGARRADGKDCW 151
           DSRG + A   DCW
Sbjct: 121 DSRGDKSAAANDCW 134


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 321,355
Number of extensions: 11356
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 76
Effective length of database: 943,746
Effective search space: 71724696
Effective search space used: 71724696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)