BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3565.p
         (204 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980146|ref|YP_001353252.1| hypothetical protein mma_1562 [...   189   1e-49

>gi|152980146|ref|YP_001353252.1| hypothetical protein mma_1562
           [Janthinobacterium sp. Marseille]
          Length = 201

 Score =  189 bits (480), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/204 (47%), Positives = 124/204 (60%), Gaps = 3/204 (1%)

Query: 1   MSQAAVDALLDFWFGPQWDTLPAHQVAERQKKLWWSKNPDIDAECRQRFEPLLKQAAANQ 60
           M++A  D +L FWFG + D     + AE+Q KLWWSK+  +D E  +RF+     AA  +
Sbjct: 1   MTKATADTVLQFWFGSEADDT---KTAEQQNKLWWSKDDAVDQEISERFKKSTLAAANGE 57

Query: 61  LDDWTETPRSMLALIVLLDQIPRNIYRDTAQAFAFDELAHQCCHLALAMGLDQALPAIAR 120
           LD+W E PR +LALI+L DQ PRN+YR    +FAFD LA Q   +AL  G ++ L  I R
Sbjct: 58  LDEWAEQPRDLLALILLTDQFPRNMYRGLPTSFAFDALALQWSLIALDHGFERHLRPIER 117

Query: 121 VFIYLPLEHTEDLDDQQYVVQLMRTLAKAASGEDKPAFDGYADYARRHHAVIERFGRFPH 180
           VF+YLPLEH+E L+ Q   V L   L +      K  F G+  +A RH  ++ RFGRFPH
Sbjct: 118 VFLYLPLEHSEVLEHQHRSVALFEQLLQDVPAAHKQTFSGFVQFAIRHRDIVARFGRFPH 177

Query: 181 RNRILGRTSTPEETEFLTQPGSSF 204
           RN I GR ST EE  FL   GSSF
Sbjct: 178 RNAIFGRDSTTEELAFLQTAGSSF 201


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 486,672
Number of extensions: 19092
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 125
Effective length of database: 928,958
Effective search space: 116119750
Effective search space used: 116119750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)