BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3564.p
         (73 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983202|ref|YP_001352249.1| hypothetical protein mma_0559 [...    94   2e-21

>gi|152983202|ref|YP_001352249.1| hypothetical protein mma_0559
          [Janthinobacterium sp. Marseille]
          Length = 73

 Score = 93.6 bits (231), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 1  MQKITFPLQGHPYVELNQLLKLCGLCDSGGAGKQLVADGQVKVDGKPESRKTCKISAGQK 60
          MQ++ F L    +VELNQLLKL G+CDSGGAGK LVA G+VKVDG+ E RKTCKI AGQ 
Sbjct: 1  MQQLEFELN-DEFVELNQLLKLVGICDSGGAGKVLVASGKVKVDGQTELRKTCKIRAGQV 59

Query: 61 VSLGDVQITV 70
          V+LGDV+I V
Sbjct: 60 VALGDVRIKV 69


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 165,034
Number of extensions: 5194
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 73
Length of database: 1,221,021
Length adjustment: 44
Effective length of query: 29
Effective length of database: 1,058,353
Effective search space: 30692237
Effective search space used: 30692237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 122 (51.6 bits)