BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3563.p (216 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding respons... 127 6e-31 gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding respons... 112 2e-26 gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding respons... 111 4e-26 gi|152983037|ref|YP_001352599.1| two-component response regulato... 106 9e-25 gi|152981504|ref|YP_001353304.1| LuxR family DNA-binding respons... 92 2e-20 >gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 214 Score = 127 bits (318), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 122/210 (58%), Gaps = 3/210 (1%) Query: 3 IRILLVDDHTLFRSGIRLLLQRHPEFEVVGEAVDGLDGVKRARQLRPDVVLMDLNMPGLS 62 I+IL+ DDH + R G++ ++ V GEA +G + +++ R L+ DV+++D++MPG S Sbjct: 2 IQILIADDHAIIRDGLKQIISFVSNMAVAGEASNGEEVLQKLRSLQVDVLVLDMSMPGRS 61 Query: 63 GLEAMQLIVEDLPETAVLMLSVSEEAEDLSTALHNGAAGYLLKNIEADYLVQAIKRAAAG 122 G+ +Q I P+ +L+LS+ +E++ A+ GA+GY+ KN + L++ I++ A G Sbjct: 62 GIALIQQINAIKPDLPILVLSMHQESQYAVQAMRAGASGYITKNTASSQLIEGIRKVAEG 121 Query: 123 EPVISEAMTAKLVMQFRAARPGVAGDMKEKLTARERETMRCVAQGQSNKEIARSLDVAES 182 +S ++AKL+ Q + KLTARE + + +G S +IA+ L ++ Sbjct: 122 GTFVSPEISAKLIKQLHKPETDLP---HTKLTAREFQIFSMLVEGHSVNDIAKILSLSNK 178 Query: 183 TVKIHVQNILKKLNLSSRVQIAVYAVEHGL 212 T+ H +L+K+ S+ + YA++HGL Sbjct: 179 TISTHKAAVLQKMEASTTASLVYYALKHGL 208 >gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 215 Score = 112 bits (279), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 120/210 (57%), Gaps = 3/210 (1%) Query: 3 IRILLVDDHTLFRSGIRLLLQRHPEFEVVGEAVDGLDGVKRARQLRPDVVLMDLNMPGLS 62 I++L+ DDH + R G++ +L + V G A +G++ +K +R+ V+L+D++MP S Sbjct: 7 IKVLIADDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLLDISMPDRS 66 Query: 63 GLEAMQLIVEDLPETAVLMLSVSEEAEDLSTALHNGAAGYLLKNIEADYLVQAIKRAAAG 122 G+E ++ + ++ P+ AVLMLS+ E + +L GA+GYL K LV AI++ AAG Sbjct: 67 GIEVLKQVKKESPKIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAELVNAIRQVAAG 126 Query: 123 EPVISEAMTAKLVMQFRAARPGVAGDMKEKLTARERETMRCVAQGQSNKEIARSLDVAES 182 IS A+ +L Q + E L+ RE +T+ +A G++ +IA L ++ Sbjct: 127 RKYISAALAQELANQISDDHE---TPLHETLSDREYQTLTMIASGKTVSDIANELVLSVK 183 Query: 183 TVKIHVQNILKKLNLSSRVQIAVYAVEHGL 212 T+ ++ +L+K+ L ++ YA+++ L Sbjct: 184 TISMYRSRLLQKMKLRHNAELTHYAIKNHL 213 >gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 210 Score = 111 bits (277), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 114/212 (53%), Gaps = 7/212 (3%) Query: 3 IRILLVDDHTLFRSGIRLLLQRHPEFEVVGEAVDGLDGVKRARQLRPDVVLMDLNMPGLS 62 I+IL+VDDH + R+G++ + + P+ ++ GEA + ++ R D+VL+D+NMP S Sbjct: 2 IKILVVDDHAVVRAGVQYFIAQVPDMKIEGEAATAQEAIRLVRAQDWDIVLLDINMPDKS 61 Query: 63 GLEAMQLIVEDLPETAVLMLSVSEEAEDLSTALHNGAAGYLLKNIEADYLVQAIKRAAAG 122 G+E ++ I + PE VL+LS+ E+ L +GA+GY+ K A+ LV AI+ G Sbjct: 62 GVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVNAIQTILRG 121 Query: 123 EPVISEAMTAKLVMQFRAA--RPGVAGDMKEKLTARERETMRCVAQGQSNKEIARSLDVA 180 IS + L + + +P + E L+ RE E + QG +IA L ++ Sbjct: 122 HKYISHTVAELLTTELDTSTEKP-----LHETLSKREYEIFYKLCQGHGVTKIADELCLS 176 Query: 181 ESTVKIHVQNILKKLNLSSRVQIAVYAVEHGL 212 TV + +L+K+N+ + I YA++ L Sbjct: 177 VKTVSTYRARVLQKMNMENNAGIIYYAIKQNL 208 >gi|152983037|ref|YP_001352599.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 209 Score = 106 bits (265), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 6/211 (2%) Query: 3 IRILLVDDHTLFRSGIRLLLQRHPEFEVVGEAVDGLDGVKRARQLRPDVVLMDLNMPGLS 62 +RIL+ DDH L R G++ L +VV EA G + R+ D++L+D+ MPG+S Sbjct: 2 LRILMADDHALMREGLKHLFSVVGGIDVVAEASTGPQVFELLRRTDVDLILLDMTMPGIS 61 Query: 63 GLEAMQLIVEDLPETAVLMLSVSEEAEDLSTALHNGAAGYLLKNIEADYLVQAIKRAAAG 122 G + I +L+LS+ +E + AL GA+GY+ K+ + L+ AI R A G Sbjct: 62 GATLIHHIRSQKTAPNILVLSMHDEVQFARRALDAGASGYITKDTDPQTLIDAIHRVAEG 121 Query: 123 EPVISEAMTAKLVMQFRA-ARPGVAGDMKEKLTARERETMRCVAQGQSNKEIARSLDVAE 181 IS + +++ ARP E L+ RE E + + G+ EIA L ++ Sbjct: 122 GRFISRGLAEEMLFDHGTRARPS-----HELLSTREYEIFQLLVHGRGVNEIADELSISN 176 Query: 182 STVKIHVQNILKKLNLSSRVQIAVYAVEHGL 212 TV H +++K+ + Q+ YA+ HG+ Sbjct: 177 KTVSTHKTRLMEKMKCENVSQLIRYAIAHGM 207 >gi|152981504|ref|YP_001353304.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 231 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 116/218 (53%), Gaps = 6/218 (2%) Query: 1 MSIRILLVDDHTLFRSGIRLLLQRHPEFEVVGEAVDGLDGVKRARQLRPDVVLMDLNMPG 60 + I +++V+D FR+ + ++Q P+ + G A +G+ + DV+L+DL +P Sbjct: 11 LPIHVVIVEDDPGFRAALSKVVQDAPDMHLSGSAGTRAEGLALLQGAPADVLLVDLGLPD 70 Query: 61 LSGLEAMQLIVEDLPETAVLMLSVSEEAEDLSTALHNGAAGYLLKNIEADYLVQAIKRAA 120 SG++ ++ V P ++++ + + + ++ +GAAGYLLK+ ++ I+ A Sbjct: 71 GSGIDVIKAAVLLWPSCSIMVSTNFGDETHVMRSIESGAAGYLLKDSSPTRMIDEIRSIA 130 Query: 121 AGEPVISEAMTAKLVMQFRAARP------GVAGDMKEKLTARERETMRCVAQGQSNKEIA 174 +G IS + +++ +FR + P A D L+ RERE + +++G + +EIA Sbjct: 131 SGGSPISPIIARQILARFRTSAPVTTEEQAPAEDNSALLSTREREVLDFISKGFTTQEIA 190 Query: 175 RSLDVAESTVKIHVQNILKKLNLSSRVQIAVYAVEHGL 212 + + ++ TV+ V+ I KL ++S+ + A GL Sbjct: 191 KLMQLSHFTVRTFVRRIYSKLKVTSKAEALYEARTQGL 228 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 432,137 Number of extensions: 15319 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 16 Length of query: 216 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 137 Effective length of database: 928,958 Effective search space: 127267246 Effective search space used: 127267246 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)