BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3562.p (644 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981531|ref|YP_001354607.1| Signal transduction histidine k... 72 1e-13 gi|152982038|ref|YP_001354301.1| signal transduction histidine k... 68 2e-12 gi|152982585|ref|YP_001353143.1| two-component sensor histidine ... 67 4e-12 gi|152983036|ref|YP_001352598.1| sensory box histidine kinase [J... 60 5e-10 >gi|152981531|ref|YP_001354607.1| Signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 354 Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 18/207 (8%) Query: 440 ERNLMAQGLHDSIAQ-------GLNFLNLQVQMLEDSLAREDLAEIRDIAPLLRAGVQEN 492 ER +++ LHD + Q GL+ + Q +M +D + ++ ++ IA VQ Sbjct: 148 ERTRISRELHDELGQSLTAIRIGLSVIETQHEMHDDEWLK-SVSGLKKIADSTVESVQRI 206 Query: 493 YEDVRELLLNFRSRLQDSDLESEMRKAVEKLQRQSGLQGDIEITGDGPPLAPEQQLQVLF 552 D+R L+L+ + L M +E +S + ++ + + E + Sbjct: 207 AADLRPLILD------ELGLLPAMDWLLESFSERSAIAYELSLPSTPLAFSREASTAIFR 260 Query: 553 ILQEALSNIRKHAQASRVRIEVDNGRDF-CLTVSDDGHGFQLDQARAKGSEHVGLRIMQE 611 ILQE+L+N+ +H+QA+ V + + +DF L ++D+G G +R + +GL M+E Sbjct: 261 ILQESLTNVSRHSQATLVGVALKETKDFITLKITDNGKGIDSSVSR---HDSLGLLGMRE 317 Query: 612 RAERLGAHLDIASQPGAGTRITVRLMR 638 RA LG L I S+ G+GT I VR+ + Sbjct: 318 RAFMLGGKLKIQSRAGSGTSIEVRIPK 344 >gi|152982038|ref|YP_001354301.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 678 Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 7/201 (3%) Query: 440 ERNLMAQGLHDSIAQGLNFLNLQVQMLEDSLAREDLAEIRDIAPLLRAGVQENYEDVREL 499 E+ +A+ LHD + L LN+ + +L + E R + ++A + + R + Sbjct: 460 EKRSIARELHDDLGSALTALNMHLSLLFQQMPPEPKFTERSLK--IKALLSSITDATRRI 517 Query: 500 LLNFRS-RLQDSDLESEMRKAVEKLQRQSGLQGDIEITGDGPPLAPEQQLQVLFILQEAL 558 R +L ++ + + + ++ +G+ + + D AP + + ++QE+L Sbjct: 518 QNGLRPDKLDVFGVKVAIAEQAAEFEKYTGVTCNASLPDDRLIYAPRVDIALFRMVQESL 577 Query: 559 SNIRKHAQASRVRIEVDNGRD-FCLTVSDDGHGFQLDQARAKGSEHVGLRIMQERAERLG 617 +NI KHAQA+ V + +D+ D LT+ D+G G Q+ G GLR M+ERA LG Sbjct: 578 NNIAKHAQATHVDVVLDDTEDEILLTIRDNGVGMPTAQS---GVMTHGLRGMRERAGYLG 634 Query: 618 AHLDIASQPGAGTRITVRLMR 638 + + S G GT I + + + Sbjct: 635 GSVQVTSVVGRGTTIAISIPK 655 >gi|152982585|ref|YP_001353143.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 490 Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 99/199 (49%), Gaps = 6/199 (3%) Query: 440 ERNLMAQGLHDSIAQGLNFLNLQVQMLEDSLAREDLAEIRDIAPLLRAGVQENYEDVREL 499 ER +A+ +HD + L + + + +L L + +E+ + A + + V E V + Sbjct: 278 ERTRIAREIHDDLGGNLTAIKMALALLTRRLPGKS-SELLEKAAYVESLVDRTIETVHRI 336 Query: 500 LLNFRSRLQDSDLESEMRKAVEKLQRQSGLQGDIEITGDGPPLAPEQQLQVLFILQEALS 559 + R + D L + + ++ ++Q G+ + L +Q + I QEAL+ Sbjct: 337 AGDLRPGILDFGLVAAIDWQSKEFEKQLGIPCEFVSNQAEIDLDLDQATALFRIFQEALT 396 Query: 560 NIRKHAQASRVRIEVDNGRDFC-LTVSDDGHGFQL-DQARAKGSEHVGLRIMQERAERLG 617 NI KHAQAS V +++ + + L + D+G G +L D+A+ K G+R M ER+ +G Sbjct: 397 NIAKHAQASLVSVQLMHTPQYVRLEIIDNGRGIELADRAKPKS---FGIRGMVERSVAMG 453 Query: 618 AHLDIASQPGAGTRITVRL 636 L +++ P GT + + L Sbjct: 454 GSLSVSTAPKGGTVVAINL 472 >gi|152983036|ref|YP_001352598.1| sensory box histidine kinase [Janthinobacterium sp. Marseille] Length = 626 Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 107/258 (41%), Gaps = 16/258 (6%) Query: 394 FSLHFSRERHISEEERRLLETLGRHLGSAIE--NQ--------RLIAREKEFAVSHERNL 443 F++H E E +L + R++ S IE NQ R +A E ++ ER Sbjct: 374 FAVHAVAEFDSKGEAESVL-AISRNITSIIEAENQLRQSQKLLRQLADRSETSIEDERKH 432 Query: 444 MAQGLHDSIAQGLNFLNLQVQMLEDSLAREDLAEIRDIAPLLRAGVQENYEDVRELLLNF 503 +A+ LHD +AQ L+ L + V +++ A A + + + R ++ Sbjct: 433 IARELHDDLAQHLSALRMNVSVMKLEFGHLSSA-FSGQAETMIERLDATIKIARNVITAL 491 Query: 504 RSRLQDSDLESEMRKAVEKLQRQSGLQGDIEITGDGPPLAPEQQLQVLFILQEALSNIRK 563 R D + + V+ + + I + L+ + I QE+L NI + Sbjct: 492 RPTALDMGIVQALEWLVKDFSTHKEISCRLHIHDENLILSDRSATAIFRIAQESLRNISR 551 Query: 564 HAQASRVRIEVDNGRDFC-LTVSDDGHGFQLDQARAKGSEHVGLRIMQERAERLGAHLDI 622 HA+A V + + + C L + DDG GF GL ++ER LG ++I Sbjct: 552 HAEACNVDVNLSHKDGMCLLAIRDDGRGFNTTNVPFNS---FGLMGIKERVLILGGKVEI 608 Query: 623 ASQPGAGTRITVRLMREE 640 S+ G GT I V + E Sbjct: 609 ESEEGQGTTIRVNIPTTE 626 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,213,465 Number of extensions: 45752 Number of successful extensions: 196 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 4 Length of query: 644 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 555 Effective length of database: 891,988 Effective search space: 495053340 Effective search space used: 495053340 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)