BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3561.p
         (335 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980414|ref|YP_001353667.1| molybdenum cofactor biosynthesi...   198   4e-52

>gi|152980414|ref|YP_001353667.1| molybdenum cofactor biosynthesis
           protein A [Janthinobacterium sp. Marseille]
          Length = 370

 Score =  198 bits (503), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 177/316 (56%), Gaps = 11/316 (3%)

Query: 13  LQDRFGRRISYVRLSVTDRCDLRCSYCMPKGF----NGFEEPANWLSFDEISRVIGAFAR 68
           L D   R +  +R+S+TDRC+ RC YCMPK        F   ++ LSF+EI+R+   F  
Sbjct: 31  LADTRARPLQDLRISITDRCNFRCVYCMPKEVFDKDYAFLPQSSLLSFEEITRITSLFVA 90

Query: 69  LGVGRVRLTGGEPLLRRHLPMLAAQLSAL---PGVE-ELSLSTNATQMHKHAQDLRAAGV 124
            GV ++RLTGGEPLLR+++  L A LSAL    G E +L+L+TN + + + AQ L+ AG+
Sbjct: 91  HGVEKIRLTGGEPLLRKNVEKLIAMLSALRTPDGRELDLTLTTNGSLLARKAQALKDAGL 150

Query: 125 TRINVSLDSLERACVTRITGRD-SLGNVMAGLAAAKAAGFAPIKVNMVVLHGVNEAEIPR 183
            R+ VSLD+L+     ++   D ++ +V+ G+ AA   G  PIK+NMVV  G+N+ EI  
Sbjct: 151 KRVTVSLDALDDKVFKQMNDVDFAVSDVLEGIEAAHRVGLGPIKINMVVKGGMNDQEIVP 210

Query: 184 MAEFCFEQGFILRLIEAMPMGETG--RHSGTVDIGPIREQLVARFGLQPLAAELGGGPAR 241
           MA       +ILR IE M +G +   +    +    +  ++ A   L+ +A       A 
Sbjct: 211 MARHFKGSPYILRFIEYMDVGASNGWKMDEVIPSAEVIRRINAEMPLEAIAPNYVSETAG 270

Query: 242 YWQRADGDGAIGFISPISQHFCATCNRVRVSVDGTLYLCLGQEARVELRPLLRAGIDDAG 301
            W+  DG G IG IS ++Q FC+ C+R R+S +G LY CL      +LR L+R G  D  
Sbjct: 271 RWRYVDGGGEIGAISSVTQAFCSDCSRARLSTEGKLYTCLFATGGHDLRALMRGGNTDEE 330

Query: 302 LEEAIRLAIELKPERH 317
           +  AI      + +R+
Sbjct: 331 ISTAIAHIWRARTDRY 346


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 731,894
Number of extensions: 28634
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 251
Effective length of database: 910,473
Effective search space: 228528723
Effective search space used: 228528723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)