BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3560.p
         (248 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isome...    58   4e-10
gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans isome...    55   5e-09

>gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans
           isomerase [Janthinobacterium sp. Marseille]
          Length = 638

 Score = 58.2 bits (139), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 77  ECRRHYQAAPDRFRVGALAEVSHILFQVTEGV--DLAALRLHAESVLAESLAQ-PQRFAE 133
           + + +Y+    ++ V      SHIL    +       A        L E+L + PQ FA+
Sbjct: 250 DIKSYYEQNAKQYGVDEQRRASHILIAANKDAPAAEKAAAKAKAEKLLETLRKSPQDFAK 309

Query: 134 LAVINSNCPSGAQ-GGSLGQITRGACVPEFEKAVFAAQAGAILPRLVESRFGLHIVQLGR 192
           LA  NSN P  A+ GG L   ++G  V  FE A F  + G  L  LVES +G HI+++  
Sbjct: 310 LAKENSNDPGSAERGGDLDFFSKGMMVKPFEDAAFKLKQGE-LSDLVESDYGFHIIKVTA 368

Query: 193 KFDGQALPFEAVRENIAQALQR 214
                  P E V+ +IA  +++
Sbjct: 369 IKPATLKPLEQVKGDIANDIRK 390


>gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans
           isomerase SurA [Janthinobacterium sp. Marseille]
          Length = 469

 Score = 55.1 bits (131), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 98  SHILFQVTEGVDLAALRLHAESVLAESLAQPQRFAELAVINSNCPSGAQGGSLGQITRGA 157
           SHIL +V + V  A  R     +      +   F ELA + SN  S A+GG LG I  G 
Sbjct: 328 SHILIKVNQVVSAAEARRKLLELKQRLDNKAATFEELAKLYSNDFSAAKGGDLGWIYPGD 387

Query: 158 CVPEFEKAVFAAQAGAILPRLVESRFGLHIVQLG-RKFDGQALPFEAVRENIAQALQRAS 216
            VPEFE+A+ A   G +    +ES FG H++ +  RK D   +  E  R    QA++   
Sbjct: 388 TVPEFERAMDALPIGQV-SEPIESPFGYHLILVTERKSDD--VSQERQRMIARQAIREQK 444

Query: 217 FDRAVRQYLQLLVGRARI 234
            + A + +L+ +  RA +
Sbjct: 445 VEEATQDWLRQVRDRAYV 462


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 449,513
Number of extensions: 16104
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 3
Length of query: 248
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 167
Effective length of database: 921,564
Effective search space: 153901188
Effective search space used: 153901188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)