BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3553.p
         (126 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981837|ref|YP_001352251.1| hypothetical protein mma_0561 [...   182   5e-48

>gi|152981837|ref|YP_001352251.1| hypothetical protein mma_0561
           [Janthinobacterium sp. Marseille]
          Length = 128

 Score =  182 bits (462), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 104/122 (85%)

Query: 1   MTLADWCILIAGLMPVLTIAVAKYGRRDFDNAEPRAWLDQQTGLRRRADYAHRNHFEAFP 60
           M L+ WC+LIAG++P  T+A+AK+G+RDFDN+EPR WL+QQ GLRRRAD AHRNHFEAFP
Sbjct: 1   MNLSYWCVLIAGILPAATVAIAKWGKRDFDNSEPRRWLEQQEGLRRRADSAHRNHFEAFP 60

Query: 61  FFAAAVLVAQQVGAPQAQIDIAALVFIAARILYTVLYLTDKPSARSAVWIVGYLSVIALF 120
           FFAA VLVAQQ+ APQ  I++ A+ FIAAR++YT+LYLTD+ + RS  W++GYL+VI LF
Sbjct: 61  FFAAGVLVAQQLNAPQDSINMLAVAFIAARLVYTLLYLTDRATLRSVTWLIGYLAVIGLF 120

Query: 121 VI 122
           ++
Sbjct: 121 LL 122


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.331    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 247,733
Number of extensions: 7128
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 53
Effective length of database: 951,140
Effective search space: 50410420
Effective search space used: 50410420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 124 (52.4 bits)