BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3552.p
         (292 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981174|ref|YP_001354569.1| hypothetical protein mma_2879 [...   417   e-118

>gi|152981174|ref|YP_001354569.1| hypothetical protein mma_2879
           [Janthinobacterium sp. Marseille]
          Length = 287

 Score =  417 bits (1072), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/292 (71%), Positives = 245/292 (83%), Gaps = 5/292 (1%)

Query: 1   MKWEGNRESDNVEDRRGEEGGGGGGFGFGGRSIGLGTVAVALVASYFLGINPLTMLNLLS 60
           MKWEGNRESDNVEDRRG  GGG GG     RSIG+GT+ +AL+ SYFLGINP T+++LLS
Sbjct: 1   MKWEGNRESDNVEDRRGSGGGGFGG-----RSIGIGTIVIALLGSYFLGINPATIISLLS 55

Query: 61  GGGAPAPVQQAPAHKPSPNDQMARFVSTVLADTEDTWGQIFANNGKQYVRPKLVLFSGST 120
           GG      QQAPA +P  +DQ ARFV+TVLADTED W  IF ++G  Y++PKLVLFSG T
Sbjct: 56  GGPGQLQSQQAPAQRPPADDQTARFVATVLADTEDVWTPIFRDSGASYIKPKLVLFSGQT 115

Query: 121 PTACGTGQTATGPFYCPGDQKVYIDLSFYELMKQRFKVSGNFAQAYVIAHEVGHHVQHLM 180
           PTACGTG TA GPFYCPGDQKVYIDL F++ M+ RF+VS NFAQAYVIAHEVGHHVQH+ 
Sbjct: 116 PTACGTGDTAAGPFYCPGDQKVYIDLEFFQTMRDRFRVSSNFAQAYVIAHEVGHHVQHIS 175

Query: 181 GISDKVDAARRNATEKQANAMSVRLELQADCFAGVWAYHANQARHILEEGDIEDALHAAS 240
           GI DKVD ARR  T+KQANA+SV++ELQADCFAGVWAYHANQAR ILE+GD+E AL AAS
Sbjct: 176 GIMDKVDQARRGGTQKQANALSVKVELQADCFAGVWAYHANQARSILEDGDVESALKAAS 235

Query: 241 AIGDDALQRQARGVVVPDSFTHGSSAQRVTWFKRGIAAGKVSACNTFATKEL 292
           AIGDDALQ+Q++GVVVPDSFTHG+SAQRV WF+RGI  G+++ CNTFA ++L
Sbjct: 236 AIGDDALQKQSQGVVVPDSFTHGTSAQRVRWFQRGIQRGQLNDCNTFAAQQL 287


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 617,231
Number of extensions: 23198
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 210
Effective length of database: 917,867
Effective search space: 192752070
Effective search space used: 192752070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)