BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3547.p
         (478 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980617|ref|YP_001352252.1| exonuclease I [Janthinobacteriu...   720   0.0  

>gi|152980617|ref|YP_001352252.1| exonuclease I [Janthinobacterium
           sp. Marseille]
          Length = 476

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/476 (70%), Positives = 390/476 (81%), Gaps = 1/476 (0%)

Query: 1   MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGEAIMIYCKPAPDYLPDPISCL 60
           MS HTFLWHDYETFG  PRRDRPAQFAA+RTDAELNEIGE IM+YCKPA D+LPDP SCL
Sbjct: 1   MSTHTFLWHDYETFGIQPRRDRPAQFAAIRTDAELNEIGEPIMLYCKPANDFLPDPQSCL 60

Query: 61  ITGITPQHCLQHGLPEHEFAARIEQTLGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120
           ITGITPQ CL+ G+PEHEFAA IE+ L + GTIGVGYNTIRFDDEVTRFMFWRNLIDPYA
Sbjct: 61  ITGITPQTCLERGVPEHEFAAEIEKALSQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA 120

Query: 121 REWANGCGRWDLLDVVRLTYALRPQGITWPKKEDGSVSFKLEDLSKANGLVHEAAHDALS 180
           REW N CGRWD+LDVVR  YALRP+GI WPK  DG  SF+LE L+  NG+ HEAAHDALS
Sbjct: 121 REWQNSCGRWDILDVVRTAYALRPEGINWPKHPDGRPSFRLEQLTAENGIAHEAAHDALS 180

Query: 181 DVRATIALARLIRQNNPRLFDFALALHKKDKAAAEIGLPVAKPFLHVSGMFPVANGCLAL 240
           DVRATIALARLIR+  P+LFDF L LHKKDK AAEIGLP+ +PFLH++GM P   GC+A+
Sbjct: 181 DVRATIALARLIRERQPKLFDFCLGLHKKDKVAAEIGLPLRRPFLHITGMIPAERGCIAV 240

Query: 241 MWPLGMHPTNKNEVIAWDLGYDPSELAGLDAAAVRQRMFTKRDELPEGMTRLPIKSIHLN 300
           +WPL +HPTNKNEVI WDL  DPSELA LDA  +R RMF+K D LPEG++RLPIK+IHLN
Sbjct: 241 VWPLAVHPTNKNEVIVWDLSVDPSELATLDAETIRMRMFSKADALPEGVSRLPIKTIHLN 300

Query: 301 KSPMVVGNLKTLTTERAAELNIDVQAALRHADLAAALPDLAPLWRQVYQRDSEAAADVDE 360
           KSP+V+ NLKTL+ E   +  ID+  ALRHA++AAA PD+  +W+ V+ R  EAAADVDE
Sbjct: 301 KSPIVINNLKTLSAEMTEQWGIDIPTALRHAEVAAAAPDMTAIWQDVFYRPQEAAADVDE 360

Query: 361 DLYGGFIGNGDRRQLTQLRALPPQALATASVAFDDMRLNEVLFRYRARNFPQTLSPDEAQ 420
           DLYGGF+GN DRR L +LRAL P+ALA A   F D RL E+++RYRARNFP TL+ +E Q
Sbjct: 361 DLYGGFVGNNDRRTLQELRALSPEALAQAKPGFSDPRLEEIVWRYRARNFPHTLNEEEQQ 420

Query: 421 HWEEHRAARLFEGAGGARTIAQLFEQIDQLQEESDDERTQDILGALYDYAEMIAPA 476
            WE+HR ARLF+G GGARTI  LF +IDQL E + DER ++ILGALYDYAE IAP+
Sbjct: 421 RWEDHRVARLFDGEGGARTIETLFAEIDQLSETA-DERGEEILGALYDYAEAIAPS 475


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,101,998
Number of extensions: 44806
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 391
Effective length of database: 899,382
Effective search space: 351658362
Effective search space used: 351658362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)