BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3541.p
         (337 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981460|ref|YP_001354345.1| cation transporter [Janthinobac...   149   2e-37

>gi|152981460|ref|YP_001354345.1| cation transporter
           [Janthinobacterium sp. Marseille]
          Length = 340

 Score =  149 bits (377), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 162/322 (50%), Gaps = 6/322 (1%)

Query: 16  EPAGFICAFRFE-EGRARQMNWNEVVDYHPVTPA-----FTWLHVKTADVKIQQWLEHHS 69
           +P+G I  F F+ E  A  +N +E + +  + PA     F WLH   ++   ++W+  H+
Sbjct: 12  DPSGLIWGFLFKPEQPASLINSSEALAWLQLAPAQRAGEFIWLHFNLSNTASEKWMSEHA 71

Query: 70  DIAEYITEFLLSSDTHPGLHATPDGVYGTLTDMKMEIGDTGTEKGALHFYLDRTRLLTLR 129
            +A+   E L        +    + +   + D+         +   L   + +  +++ R
Sbjct: 72  GVADEFNEALHDGSRSTRIELADNTLIAVVNDVLHSFSFESADIATLWLSVTQDVVISAR 131

Query: 130 TQPLISTNMLRQKVLDGGDFDNPMDLFAELLRCLADGFNARLDKLNDKVDDIEFSVLSDR 189
             PL S   LRQ V  G    + ++L   LLR  AD     +     +VD +E S+L+ R
Sbjct: 132 RTPLKSIERLRQAVEHGDTIRSSVELLVHLLRDQADVLVKIVRDAVARVDRVEDSLLAGR 191

Query: 190 RAEDRAELSSIRRQLAELRRFIAPERRILAQFQRLRPSWVPREALEDLTHALDELNELHS 249
             + R +L ++RR L  L+R +APE   L +  +  P WV     ++L  + +E + + S
Sbjct: 192 LNKQRTDLGALRRILVRLQRLLAPEPAALFRLLQKPPVWVVELDSQELRQSTEEFSVVLS 251

Query: 250 TVEAVYERAKLLQEEIASQMSEQMNRNLMALSILTALLMPATLVSGIFGMNVAGLPGLHD 309
            + ++ ER KLLQEEIA+Q++E+ +R+L  L+I+T L +P  +++G+ GMNV G+P    
Sbjct: 252 DMSSLQERIKLLQEEIAAQVNEENSRSLYVLTIVTVLALPINIIAGLLGMNVGGVPLAEH 311

Query: 310 EASFWIVMGVMGGLGVATVAFL 331
              FWIV G++    V    F+
Sbjct: 312 AYGFWIVAGIVATFTVVAGWFV 333


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 804,691
Number of extensions: 31754
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 253
Effective length of database: 910,473
Effective search space: 230349669
Effective search space used: 230349669
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)