BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3539.p
         (583 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980200|ref|YP_001352269.1| glutaminyl-tRNA synthetase [Jan...   933   0.0  
gi|152980247|ref|YP_001352803.1| glutamyl-tRNA synthetase [Janth...    62   1e-10

>gi|152980200|ref|YP_001352269.1| glutaminyl-tRNA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 582

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/586 (75%), Positives = 504/586 (86%), Gaps = 7/586 (1%)

Query: 1   MSNELKNGHT---PAPSTNFLRGIIESDLVSGTYAERSNQDGEALPQVVTRFPPEPNGYL 57
           MSN+ KNG T   PAPS NFLRGIIE+DL +G + +R  +DG+ LP V+TRFPPEPNGYL
Sbjct: 1   MSNDSKNGSTNPTPAPS-NFLRGIIEADLAAGKHEKRVGKDGQPLPTVITRFPPEPNGYL 59

Query: 58  HIGHAKSICLNFGLAADYAGRCHMRFDDTNPEKEEQEYVDTILDSVKWLGFSWEHEGKSH 117
           HIGHAKSICLNFGLA DYAGRC++RFDDTNP KEEQEYVDTI+DSVKWLGF W+   K H
Sbjct: 60  HIGHAKSICLNFGLARDYAGRCNLRFDDTNPTKEEQEYVDTIIDSVKWLGFDWKEGDKEH 119

Query: 118 LYYASNYFDVMYACAQALIRKGLAYVDEQNAEQMRENRGTLTEAGKDSPWRDRPAEESLR 177
           LY+AS+YFD +Y  A+ LI +G AYVD Q+AE M +NRG   E GK+SP+RDRPA ESL 
Sbjct: 120 LYFASDYFDQLYEMAEYLINQGHAYVDSQSAEDMAKNRGNFGEPGKNSPFRDRPAAESLD 179

Query: 178 LFEEMRDGKHPDGSMILRARIDMASPNMNLRDPAIYRIRHATHHNTGDKWRVYPMYTFAH 237
           LF  M+ G+  DG+ ILRA+IDMASPNMNLRDPAIYRIRHA HH TGDKW VYPMY +AH
Sbjct: 180 LFRRMKAGEFEDGAHILRAKIDMASPNMNLRDPAIYRIRHAHHHRTGDKWCVYPMYDYAH 239

Query: 238 PIEDALENISHSICTLEFEDQRPFYDWLLEHLAEEGFFKKPLPHQYEFARLNLTYIITSK 297
           PIEDA+ENI+HS+CTLEF+D RPFYDW+LE LAE GFF KPLPHQYEF+RLNLTYI+TSK
Sbjct: 240 PIEDAIENITHSVCTLEFQDHRPFYDWVLERLAEGGFFAKPLPHQYEFSRLNLTYIVTSK 299

Query: 298 RKLRQLVDEKIVSGWDDPRMPTIVGLRRRGYTPEAIRLMCDRTGASKNNSWIDFSVLEGA 357
           RKLRQLV+E IV GWDDPRMPTIVG+RRRGYTPEAI+LMC+RTG +K++ WID+SVLEGA
Sbjct: 300 RKLRQLVEENIVEGWDDPRMPTIVGMRRRGYTPEAIQLMCERTGVTKSDGWIDYSVLEGA 359

Query: 358 LREDLDPKAPRAVAVLRPLKLIIDNFPEGVSIDCSAPVYPPAHPEHDTAHRHFPITKELW 417
           LREDLD KAPRA+AVLRPLKLIIDNFPEG +++CSAPV+ P HPE    +R FPI+KELW
Sbjct: 360 LREDLDEKAPRAIAVLRPLKLIIDNFPEGETVECSAPVH-PHHPER--GNRTFPISKELW 416

Query: 418 IEREDFMEEPTKGYFRLFPGNKVRLRYGYVVECTGCDKDEHGNVIAVHCNYFEDSKSGTE 477
           IE+EDFME P+KGYFRLFPGNK RLRYGYVVEC G DKD  GN+IAVHC YF DSKSGTE
Sbjct: 417 IEQEDFMEVPSKGYFRLFPGNKARLRYGYVVECVGADKDADGNIIAVHCTYFPDSKSGTE 476

Query: 478 GSSNYKVKGNLHWVSADHALATEVRLYDRLFSDPHPDAGGKDFLAALNPNSKEVITAYLE 537
           GS+NYKVKGNLHWVSA HAL  EVRLYDRLF+DPHPDAGGKDF  ALNP+SKEV+TA++E
Sbjct: 477 GSANYKVKGNLHWVSAAHALEAEVRLYDRLFTDPHPDAGGKDFKLALNPDSKEVVTAFVE 536

Query: 538 PTLKNAQPGEIYQFERHGYFVADRVDSTAGQPIFNRAVTLKDSWGK 583
           P + + QP E  QFERHGYFVADRVDSTAG+P+FNR VTLKDSWGK
Sbjct: 537 PGVASVQPDEKLQFERHGYFVADRVDSTAGRPVFNRVVTLKDSWGK 582


>gi|152980247|ref|YP_001352803.1| glutamyl-tRNA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 463

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 32/219 (14%)

Query: 45  VVTRFPPEPNGYLHIGHAKSICLNFGLAADYAGRCHMRFDDTNPEKEEQEYVDTILDSVK 104
           V TRF P P GYLH+G A++   ++  A  + G   +R +DT+ E+   E V  I++ ++
Sbjct: 3   VRTRFAPSPTGYLHVGGARTALFSWAYARHFGGTFVLRIEDTDLERSTPEAVQAIIEGME 62

Query: 105 WLGFSWEHEGKSHLYYASNYFDVMYACAQALIRKGLA---YVDEQNAEQMRENRGTLTEA 161
           WLG   + EG    +Y     D        ++  G A   Y   +  E MRE +    E 
Sbjct: 63  WLGLHHD-EGP---FYQMQRMDRYREVIGQMLAAGTAYHCYSSPEEVEAMRERQRAAGEK 118

Query: 162 GK-DSPWRDRPAEESLRLFEEMRDGKHPDGSMILRAR---------IDMASPNMNLRDPA 211
            + D  WR     E+ +    + +G+ P    ++R R         +D+   ++ + +  
Sbjct: 119 PRYDGTWR----PEAGKTLPAIPEGRKP----VVRFRNPTEGDVTWLDVVKGSITISNRE 170

Query: 212 IYRIRHATHHNTGDKWRVYPMYTFAHPIEDALENISHSI 250
           +  +  A    T       P Y F   ++D+   I+H I
Sbjct: 171 LDDLVIARPDGT-------PTYNFCVAVDDSDMKITHVI 202


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,511,445
Number of extensions: 65867
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 583
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 495
Effective length of database: 895,685
Effective search space: 443364075
Effective search space used: 443364075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)