BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3538.p
         (266 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981608|ref|YP_001352830.1| alginate biosynthesis regulator...   112   2e-26

>gi|152981608|ref|YP_001352830.1| alginate biosynthesis regulatory
           protein AlgR [Janthinobacterium sp. Marseille]
          Length = 262

 Score =  112 bits (281), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 119/227 (52%), Gaps = 25/227 (11%)

Query: 4   PTALIAEDEP----LLAQALRQALARCWPELPAPQLAVNGDEALEQALLLLPDVLFLDIK 59
           P  LI +DE      L   L    A C  EL     A    +AL+  + L PD++ LD++
Sbjct: 3   PRILIVDDEAPARARLTTLLSDIAAECPHELVGE--AAQAQQALDSIVALAPDIVLLDVQ 60

Query: 60  MPGRSGLEVARELAEEWPAQRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQERLALT 119
           MPG +G+E+A  LA+    ++  P ++FVTAYD+YAL+AFE  A+DYLLKPV   RLA  
Sbjct: 61  MPGMTGIELASHLAQ---GEQAAPAVIFVTAYDEYALKAFEVHALDYLLKPVRASRLADA 117

Query: 120 VTRLQSLLAQRAAGEQEAQLERALAQLRTLSTPFTEEAPPRLDYIRAAVGNKVRMIAVDD 179
           + R+ SL     AG Q+  +      L++    F+ +   RL            ++ V D
Sbjct: 118 IRRVGSL----QAGTQKKMMSEVANTLQSARKNFSVQERGRL-----------LLVPVAD 162

Query: 180 VLYFEATDKYVNVVTAQGDALIRTSLRELIPQLDGRQFWQIHRSTVV 226
           VLY +A  KYV + T Q + L+  SL  L  +    QF ++HR+ +V
Sbjct: 163 VLYLKAEAKYVTLRTRQREYLLEASLSALEQEF-ATQFIRVHRNALV 208


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 501,017
Number of extensions: 17392
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 184
Effective length of database: 917,867
Effective search space: 168887528
Effective search space used: 168887528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)