BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3537.p
         (380 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982870|ref|YP_001352829.1| two-component system sensor pro...    96   4e-21

>gi|152982870|ref|YP_001352829.1| two-component system sensor
           protein [Janthinobacterium sp. Marseille]
          Length = 323

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 92/188 (48%), Gaps = 18/188 (9%)

Query: 161 QAQLQMLQAQIEPHMLFNTLATLQSLISTDPLQAELMLNQLVQYLRTTLSASRADSTSLQ 220
           +A+LQ LQA+I PH LFN+L  + SLI ++P +AE  L  +    R  +  +R D T+L 
Sbjct: 128 EARLQALQARIRPHFLFNSLNAVLSLIRSEPRRAETTLEDMADLFRVLMRDAR-DITTLG 186

Query: 221 KEFDLIKAYLGLMSLRMGLRLSYTLQLP----EHLGRLRLAPMLLQPLVENAIKHGLEPK 276
            E  +   YL +  +R+G RL           + L R R   +LLQPL+ENA+ +G+EP 
Sbjct: 187 NEVRIGMQYLSIEKVRLGERLLVKWDTDGISADTLQRARTPALLLQPLLENAVHYGVEPS 246

Query: 277 VAGGNCTVRAAVHNDMLVLSVLDTGVGLPTSISLNQPPAQKEPVIGMHFGLDNIRERLTT 336
                 T+  A   D +              I +  P        G H  LDNIRERLT 
Sbjct: 247 PDSALITISIARVRDRI-------------EIMMTNPYHADVESTGNHMALDNIRERLTL 293

Query: 337 LYGPLAEL 344
           LY   A+L
Sbjct: 294 LYDMEAQL 301


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 703,682
Number of extensions: 25236
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 295
Effective length of database: 906,776
Effective search space: 267498920
Effective search space used: 267498920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)