BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3534.p
         (874 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979781|ref|YP_001352273.1| alanyl-tRNA synthetase [Janthin...  1280   0.0  

>gi|152979781|ref|YP_001352273.1| alanyl-tRNA synthetase
           [Janthinobacterium sp. Marseille]
          Length = 869

 Score = 1280 bits (3312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/870 (73%), Positives = 718/870 (82%), Gaps = 5/870 (0%)

Query: 1   MNSAEIRDKFLKFFESKEHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRA 60
           MNS+EIR+KFLKFFESK HTIV SS LVPGNDPTL+FTNSGMVQFKDVFLG DKR Y RA
Sbjct: 1   MNSSEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYTRA 60

Query: 61  ASVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTQVYGLP 120
            SVQ CLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKR++LKW+WELLTQVYGLP
Sbjct: 61  TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALKWSWELLTQVYGLP 120

Query: 121 ADKLWATVYQTDDEAYDIWTKEIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSE 180
           A+KL ATVY  DDEA+DIWTKEIGLPPERV+RIGDNKG  Y SDNFW MA+TGPCGPCSE
Sbjct: 121 AEKLLATVYIEDDEAFDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 180

Query: 181 IFYDHGPDIWGGPPGSPDADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGM 240
           IFYDHGP I GGPPGSPD DGDR+IEIWNNVFMQFD   D      ++ PLPAPCVDTGM
Sbjct: 181 IFYDHGPHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDG-----SVKPLPAPCVDTGM 235

Query: 241 GLERLAAILQHVHSNYEIDLFQALIKAAARETGETDLSNASLRVIADHIRATSFLIVDGV 300
           GLERLAAILQHVHSNYEID F+ALIKAA RET   DLSN SL+VIADHIRAT+FL+ DGV
Sbjct: 236 GLERLAAILQHVHSNYEIDTFEALIKAAGRETNTKDLSNNSLKVIADHIRATAFLVADGV 295

Query: 301 IPGNEGRGYVLRRIIRRALRHGHKLGQTKPFFYKLVKDLVVQMGAAYPELPEAAERVEMV 360
           IP NEGRGYV RRIIRRA+RHG+KLGQ KPFF+KLVKDLV QMG AYP+L   A+R+  V
Sbjct: 296 IPSNEGRGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLKADAQRITDV 355

Query: 361 LKQEEERFGETLEHGMKILEAALAAHTGKLDGETAFTLYDTYGFPLDLTADICRERKVEL 420
           LK EEERF ETL +GM+IL+AALA     L GE AF L+DT+GFPLDL+AD+CRER + +
Sbjct: 356 LKAEEERFFETLANGMEILDAALAGDAKVLPGEVAFKLHDTFGFPLDLSADVCRERGLSV 415

Query: 421 DEAGFNAAMERQKTAARAAGKFKMAAAIEYTGDKTRFVGYESLAKSAKVVALYVAGSPVQ 480
           DEAGF AAME+QK A RAAGKFKM  A+EYTG    F GYE L + A VV LY  G+ V 
Sbjct: 416 DEAGFAAAMEKQKAAGRAAGKFKMERAVEYTGAGNTFTGYEHLEEQATVVGLYFEGTAVP 475

Query: 481 KIEAGQDAIVVLDTTPFYAESGGQAGDAGALEAANALFAVADTQKIQAEVFGHHGQLIKG 540
            ++ GQ  IVVLDTTPFY+ESGGQ GD G + A    F V DTQKI+A+V+GHHG   +G
Sbjct: 476 SLKEGQAGIVVLDTTPFYSESGGQVGDQGFISAEGVQFGVEDTQKIKADVYGHHGVQTQG 535

Query: 541 SLAIGDAVQAKVDADQRARTMRNHSATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSH 600
           +L +GD V+A VD  +RA TMRNHS TH+MHKALREVLG HV QKGSLVD DKTRFDF+H
Sbjct: 536 TLTVGDKVKAAVDGARRAATMRNHSVTHIMHKALREVLGDHVQQKGSLVDPDKTRFDFAH 595

Query: 601 NAPMTAEEIRRVEEIVNREVLANVATGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIGT 660
           NAP+T E+I  +E+ VN E+L N  T A++M  + A   GA+ LFGEKYG+ VRVL IG+
Sbjct: 596 NAPVTREQILEIEKRVNAEILLNSDTQARVMDIESAQKTGALMLFGEKYGETVRVLDIGS 655

Query: 661 STELCGGTHVARTGDIGLFKIVSEGGVAAGIRRVEAVTGEGALALVQSLSTRVAEAAAAL 720
           S ELCGGTHV+RTGDIGLFK++SE GVAAG+RR+EA+TG  AL  VQ L   +  AAA +
Sbjct: 656 SRELCGGTHVSRTGDIGLFKVMSESGVAAGVRRIEAITGAKALGYVQDLEAVIHSAAAMM 715

Query: 721 KTQPEELLPRIGQVQDQVKALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGA 780
           KTQP EL PR+ QV DQ+KALE+E+ +LK KLASSQGDEL+ QAVD+ GIKVLAA LEGA
Sbjct: 716 KTQPAELEPRLAQVLDQMKALEREVGALKGKLASSQGDELLAQAVDVKGIKVLAAVLEGA 775

Query: 781 DVATLRETMDKLKDKLKTAAIVLGSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQVGG 840
           DVATLR TMDKLKDKLKTAAIVL +V DGKVSLIAGVTAD+ AKVKAG+LVNFVAQQVGG
Sbjct: 776 DVATLRNTMDKLKDKLKTAAIVLAAVNDGKVSLIAGVTADSIAKVKAGDLVNFVAQQVGG 835

Query: 841 KGGGRPDMAQAGGTEPAALPGALQGVAGWV 870
           KGGG+PDMAQAGGT+ + LP ALQGVA WV
Sbjct: 836 KGGGKPDMAQAGGTDASGLPTALQGVAAWV 865


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,907,690
Number of extensions: 77770
Number of successful extensions: 288
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 1
Length of query: 874
Length of database: 1,221,021
Length adjustment: 92
Effective length of query: 782
Effective length of database: 880,897
Effective search space: 688861454
Effective search space used: 688861454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)