BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3530.p (702 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 895 0.0 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 508 e-145 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 480 e-136 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 396 e-111 gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protei... 377 e-105 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/684 (62%), Positives = 538/684 (78%), Gaps = 2/684 (0%) Query: 9 RLLETLLANLDGMVYRCRDDAHWTLEFVSDGCQALTGYTPADLLLNSRISFLQLTHPEDR 68 RLL TLLANL+GMVYRCR DAHWT+EFVS+GC ALTGYT DLL NSR+S+ Q+THP+DR Sbjct: 17 RLLSTLLANLEGMVYRCRLDAHWTMEFVSEGCFALTGYTEEDLLFNSRVSYDQITHPDDR 76 Query: 69 AMVRKHIDACMRERRRIDIEYRIVHADGSLRWVWERGVGLYNAAGKVEAMEGFLQDVTER 128 VR I +R RR DIEYRIV ADGS+R VWERG + + + +EGF+QDVTER Sbjct: 77 RHVRDTILEAVRNNRRFDIEYRIVRADGSIRHVWERGTNISHDNKAWDILEGFIQDVTER 136 Query: 129 KEAAHALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDLIVGLRDI 188 K+A AL+EAERRYRSIFENAIEG++Q+TP Y+AVNPALAR+YGY SP+ LI LRDI Sbjct: 137 KQADEALREAERRYRSIFENAIEGIYQSTPSDGYLAVNPALARMYGYDSPQALISTLRDI 196 Query: 189 THQLYVEPERRAEFMRLMEREGSVSNFESRVYRRDGDIIWISENARAVYDDSGKLVCYEG 248 +Q+YV+P+RR EF RLM + G V+NFESRV+RR+G++IWISENAR+VY+ G L+ +EG Sbjct: 197 DNQVYVDPQRRLEFKRLMAKHGVVTNFESRVHRRNGEVIWISENARSVYNSDGTLLFFEG 256 Query: 249 TVEAITERKLYEAEMRHQATHDALTGLPNRNMLHEHLQRAIQVARQKGGLTAVVFVDLDQ 308 TVEAITERKL+EAE++ QATHDALTGLPNR +L++ +Q+A+ + + G LTA+ F+DLDQ Sbjct: 257 TVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSERYGKLTAIAFLDLDQ 316 Query: 309 FKFINDSLGHQVGDELLKAVAQRLQACLRDTDMVARQGGDEFVLVLQNQTGGELGIAEVM 368 FKFINDSLGHQVGDELLK AQRL +CLR++D VARQGGDEFVL+L +Q E I M Sbjct: 317 FKFINDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTDQPNEE-AITHTM 375 Query: 369 QRILAAVARPWQTGDRELQITASIGVSRYPADGKDVETLLKQADSAMYRAKEQGRNNFQF 428 QR+L V++PW+ D E QIT SIG++ P DG+D ETLLK ADSAMY+AKE GRNNFQ+ Sbjct: 376 QRVLHEVSQPWKANDLEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQY 435 Query: 429 FAPWMDTQVSNRLEMLINLRRALDHDEFKLYYQPKLSLKDGRVIGAEALIRWQSPEQGMV 488 F+ M++ V++RLE+L LR+A+ +++F L+YQPK+SL ++IGAEAL+RW S GMV Sbjct: 436 FSAEMNSSVTDRLELLNRLRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNSAHSGMV 495 Query: 489 PPDRFIPFAEEAGLIVPIGEWVLRTACHQNKRWQQAGLPPIPVAVNLSPRQLNQS-LPDF 547 P FIP AEE GLI+P+GEWVLRTAC QN+ WQ AG PPIP++VNLSPRQL + + + Sbjct: 496 SPASFIPLAEETGLIIPLGEWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLARGDIVEV 555 Query: 548 VSGVLAQSGLDAACLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYL 607 V +L ++GL+A LELEITE+V+ D EKS A L L+ LG++IS+DDFGTGYSSLSYL Sbjct: 556 VERILTETGLEAQHLELEITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGYSSLSYL 615 Query: 608 RRFPVDALKIDKSFVRDIARDADSAAIVKAVISLAHILNLRVIAEGVEDEQQHAFLKENA 667 +RFPVD LKID+SFVRDIA D DSAAIVKA+ISL LNL V+AEG+E E Q FL N Sbjct: 616 KRFPVDTLKIDQSFVRDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQFLLANG 675 Query: 668 CDEVQGYYFGKPMAVEDFTAWMSR 691 CDE QGY KP+ ++F +++ Sbjct: 676 CDEGQGYLMSKPVPNKNFVDLLTQ 699 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 508 bits (1308), Expect = e-145, Method: Compositional matrix adjust. Identities = 271/569 (47%), Positives = 366/569 (64%), Gaps = 11/569 (1%) Query: 119 EGFLQDVTERKEAAHALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSP 178 + + D+ RK A H LQ ER + NAI PD VNPA RI GY Sbjct: 374 DDLIADIAARKHAEHELQLRERAIEA-SANAIIIARAVAPDYPLEYVNPAFTRITGYSPE 432 Query: 179 EDLIVGLRDITHQLYVEP---ERRAEFMRLMEREGSVSNFESRVYRRDGDIIWISENARA 235 E L + + + + +P E R+ + L +REG R YR+DG + W Sbjct: 433 EALGRNIGFLWGKDWEQPGIEELRS--IALEKREGHAV---LRNYRKDGALFWSDLYIAP 487 Query: 236 VYDDSGKLVCYEGTVEAITERKLYEAEMRHQATHDALTGLPNRNMLHEHLQRAIQVARQK 295 V DD+G++ + + IT K YE+E+ Q DALTGL NR++L + L +AI A + Sbjct: 488 VKDDTGEVSHFVVALYDITATKRYESELEFQTNRDALTGLANRSLLRDRLSQAISYAHRY 547 Query: 296 GGLTAVVFVDLDQFKFINDSLGHQVGDELLKAVAQRLQACLRDTDMVARQGGDEFVLVLQ 355 + FVDLD+FKF+ND+LGHQ GD LLKA+A+RLQ +RDTD V+R GGDEFVL+L Sbjct: 548 NHPIWIAFVDLDRFKFVNDTLGHQAGDLLLKAIAERLQHAVRDTDTVSRMGGDEFVLILP 607 Query: 356 NQTGGELGIAEVMQRILAAVARPWQTGDRELQITASIGVSRYPADGKDVETLLKQADSAM 415 + L ++QRI+ +A+P E I++SIGV+ YP DG E L+K AD AM Sbjct: 608 ERVDAGLSTG-IVQRIMDGIAQPLTIEGHEFFISSSIGVAVYPNDGVTPEELIKHADIAM 666 Query: 416 YRAKEQGRNNFQFFAPWMDTQVSNRLEMLINLRRALDHDEFKLYYQPKLSLKDGRVIGAE 475 YRAKE GRNNFQF+ M+ + RL + +LR A++ EF L+YQP+L L+ G+++G E Sbjct: 667 YRAKETGRNNFQFYTSSMNERALERLRLEGDLRNAMERGEFILHYQPQLDLRTGKIVGVE 726 Query: 476 ALIRWQSPEQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACHQNKRWQQAGLPPIPVAVNL 535 ALIRWQ PE GM+PP RFI AEE GLIVPIG WV+R AC QNK WQ+ GL + ++VNL Sbjct: 727 ALIRWQHPELGMIPPMRFIGLAEETGLIVPIGAWVIREACRQNKVWQEHGLGSLRMSVNL 786 Query: 536 SPRQL-NQSLPDFVSGVLAQSGLDAACLELEITENVVMKDAEKSVATLHALKRLGLQISV 594 S RQ Q L + ++ L ++ L CLE+E+TE++VM D + ++ L LK LG+Q+S+ Sbjct: 787 SARQFAQQDLLESIALALEETQLPPQCLEIELTESLVMADVDHAIGILRELKALGVQLSI 846 Query: 595 DDFGTGYSSLSYLRRFPVDALKIDKSFVRDIARDADSAAIVKAVISLAHILNLRVIAEGV 654 DDFGTGYSSLSYL+RFP+D LKID+SFV DI D D AAIV ++ISLAH L L VIAEGV Sbjct: 847 DDFGTGYSSLSYLKRFPIDVLKIDRSFVNDITTDPDDAAIVASIISLAHSLRLTVIAEGV 906 Query: 655 EDEQQHAFLKENACDEVQGYYFGKPMAVE 683 E E+Q A+L+++ CD++QGY+F +P+ + Sbjct: 907 ETEEQLAYLQQHDCDQIQGYFFSRPITAD 935 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 480 bits (1236), Expect = e-136, Method: Compositional matrix adjust. Identities = 266/578 (46%), Positives = 351/578 (60%), Gaps = 16/578 (2%) Query: 129 KEAAHALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDL----IVG 184 ++AA A R NA+ P+ VNPA RI GY + E + Sbjct: 340 RQAAEAALRLRERAIECSANAVIISSAQVPEFAIEYVNPAFERITGYTAAEAIGRSSSFL 399 Query: 185 LRDITHQ--LYVEPERRAEFMRLMEREGSVSNFESRVYRRDGDIIWISENARAVYDDSGK 242 LR+ Q LY E RA +REG R YR++G + W V DD GK Sbjct: 400 LRNDHEQAGLY---EIRAALAE--KREGKAV---LRNYRKNGSLFWNDLYIAPVKDDEGK 451 Query: 243 LVCYEGTVEAITERKLYEAEMRHQATHDALTGLPNRNMLHEHLQRAIQVARQKGGLTAVV 302 + + IT K YE + A+HD LTGLPNR +L + L+ AI + + G VV Sbjct: 452 TTHFVAAMSDITPMKQYETTLHRLASHDVLTGLPNRALLQDRLENAIAYSARNGHAVWVV 511 Query: 303 FVDLDQFKFINDSLGHQVGDELLKAVAQRLQACLRDTDMVARQGGDEFVLVLQNQTGGEL 362 VDLD+FKF+ND++GHQ GD LLK ++ RLQA +R++D VAR GGDEFVLVL G Sbjct: 512 LVDLDRFKFVNDTMGHQAGDVLLKIISDRLQASVRESDTVARLGGDEFVLVLPECGDGPS 571 Query: 363 GIA-EVMQRILAAVARPWQTGDRELQITASIGVSRYPADGKDVETLLKQADSAMYRAKEQ 421 G + +V+QRI+ AV +P E ++ S+G++ YP DG D TLL AD AMYR+KE Sbjct: 572 GYSSDVIQRIMEAVVKPLTIQGSEFFLSCSMGIAVYPNDGADPTTLLAHADVAMYRSKEL 631 Query: 422 GRNNFQFFAPWMDTQVSNRLEMLINLRRALDHDEFKLYYQPKLSLKDGRVIGAEALIRWQ 481 GRNNFQF+ P M+ Q RL + LR A++ +E L+YQP++ L G ++G EAL+RW Sbjct: 632 GRNNFQFYTPAMNDQALERLRIEGELRHAIELNELVLHYQPQVDLHTGAIVGLEALVRWN 691 Query: 482 SPEQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACHQNKRWQQAGLPPIPVAVNLSPRQLN 541 P GMV P FI AEE GLI+PIG WVL+TAC Q K WQ G + +AVNLS RQ Sbjct: 692 HPILGMVQPGSFISLAEETGLIIPIGAWVLQTACRQAKAWQDMGFTQLRIAVNLSARQFT 751 Query: 542 Q-SLPDFVSGVLAQSGLDAACLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTG 600 Q SL + + L ++GL+A LE+E+TE+ VM D E+++ TL LK LG+Q+SVDDFGTG Sbjct: 752 QASLLESIKDTLQETGLEARFLEIELTESSVMADIERNILTLRDLKSLGVQLSVDDFGTG 811 Query: 601 YSSLSYLRRFPVDALKIDKSFVRDIARDADSAAIVKAVISLAHILNLRVIAEGVEDEQQH 660 +SSL+YL+RFP+D LKID+SFVRDIA + D A+IV ++ISLAH L L VIAEGVE Q Sbjct: 812 HSSLAYLKRFPIDTLKIDRSFVRDIAINQDDASIVSSIISLAHNLKLNVIAEGVETASQM 871 Query: 661 AFLKENACDEVQGYYFGKPMAVEDFTAWMSRQGPTAQV 698 L+ C+E+QGYYF KP+ + + + A V Sbjct: 872 DILRAQGCNEIQGYYFCKPLPSDQIETLLLNESSAALV 909 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 396 bits (1017), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/431 (46%), Positives = 274/431 (63%), Gaps = 3/431 (0%) Query: 258 LYEAEMRHQATHDALTGLPNRNMLHEHLQRAIQVARQKGGLTAVVFVDLDQFKFINDSLG 317 L E+ QA D LT LPNR +L + L + + A ++ A++F+DLD FK INDSLG Sbjct: 254 LANQELTKQALQDNLTKLPNRTLLEDRLDQMVHKAVREQSRFALMFIDLDGFKAINDSLG 313 Query: 318 HQVGDELLKAVAQRLQACLRDTDMVARQGGDEFVLVLQNQTGGELGIAEVMQRILAAVAR 377 H +GD LL VA+R++ +R D AR GGDEFV++++ + A V ++ + + Sbjct: 314 HHIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLIEVNEPED--AASVADKLCTTLNQ 371 Query: 378 PWQTGDRELQITASIGVSRYPADGKDVETLLKQADSAMYRAKEQGRNNFQFFAPWMDTQV 437 P+ L I+ASIG++ YP DG LL AD+AMY K GRN + FF M+ Sbjct: 372 PFDIAQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYHTKSTGRNGYHFFEASMNINA 431 Query: 438 SNRLEMLINLRRALDHDEFKLYYQPKLSLKDGRVIGAEALIRWQSPEQGMVPPDRFIPFA 497 N+L+++ +LR AL+ EF+L+YQPK + DG V+GAEAL+RWQ P +G+V P FI A Sbjct: 432 HNQLQVIQDLRTALERKEFRLHYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPADFISLA 491 Query: 498 EEAGLIVPIGEWVLRTACHQNKRWQQAGLPPIPVAVNLSPRQL-NQSLPDFVSGVLAQSG 556 E+ GLIVPIGEWVL AC Q ++W G +AVNLS Q N +L + V LA++ Sbjct: 492 EKTGLIVPIGEWVLDEACRQMRKWYDEGYQQWKIAVNLSSVQFSNDNLVEMVKETLARNN 551 Query: 557 LDAACLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLRRFPVDALK 616 L A CL LE+TE+ M + E S+ L L LG++IS+DDFGTGYSSL YL+R P LK Sbjct: 552 LPATCLMLEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYSSLLYLKRLPATELK 611 Query: 617 IDKSFVRDIARDADSAAIVKAVISLAHILNLRVIAEGVEDEQQHAFLKENACDEVQGYYF 676 ID+ F+RD+A +D A+IV A+++L LNLR++AEGVE E+Q +L CD +QGY+ Sbjct: 612 IDRGFIRDLAHGSDDASIVSAIVALGRSLNLRIVAEGVETEKQQEYLTTLGCDTLQGYFM 671 Query: 677 GKPMAVEDFTA 687 G PMA E F A Sbjct: 672 GHPMASEQFMA 682 >gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 641 Score = 377 bits (967), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/428 (45%), Positives = 283/428 (66%), Gaps = 3/428 (0%) Query: 266 QATHDALTGLPNRNMLHEHLQRAIQVARQKGGLTAVVFVDLDQFKFINDSLGHQVGDELL 325 QA+HD LTG+PNR + +E + AR+ L + F+DLD+FK IND+LGH VGD LL Sbjct: 209 QASHDYLTGIPNRMLFYELAAAELARARRSRKLYGMFFLDLDKFKLINDTLGHAVGDLLL 268 Query: 326 KAVAQRLQACLRDTDMVARQGGDEFVLVLQNQTGGELGIAEVMQRILAAVARPWQTGD-R 384 + VA+RL+ LR+ D++AR GGDEFV+++ T E IA+V +++ V P+ D Sbjct: 269 QGVARRLRESLREYDLLARLGGDEFVMLISEMTS-ENDIAKVAAKLVEVVREPFPDLDGH 327 Query: 385 ELQITASIGVSRYPADGKDVETLLKQADSAMYRAKEQGRNNFQFFAPWMDTQVSNRLEML 444 +++I+ SIG++ YP DG++VETLL AD+AMY AK G ++FF ++ + +E+L Sbjct: 328 DIEISPSIGIALYPRDGQNVETLLTHADAAMYHAKAAGAGTYRFFDSSLNASSARDVELL 387 Query: 445 INLRRALDHDEFKLYYQPKLSLKDGRVIGAEALIRWQSPEQGMVPPDRFIPFAEEAGLIV 504 +RA+ DEF L+YQP++ L++ ++G EAL+RWQ PE G++ P+ FI AEE LIV Sbjct: 388 TRFKRAIRDDEFCLHYQPRVELQEFGLVGLEALVRWQHPEHGLIFPNDFITLAEENDLIV 447 Query: 505 PIGEWVLRTACHQNKRWQQAGLPPIPVAVNLSPRQLNQS-LPDFVSGVLAQSGLDAACLE 563 +G WV+ AC Q W+ AGLP +PVA+N+SP+QL S L + V LA+ ++ LE Sbjct: 448 LLGRWVIDAACRQIADWRAAGLPLVPVAINVSPKQLKDSALLETVMETLARYQIEPGLLE 507 Query: 564 LEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLRRFPVDALKIDKSFVR 623 +EITE ++D + + L L+ GL+I++DD+GTG+S L L++ P+ A+KID+SFVR Sbjct: 508 IEITEGCFIEDFDTANRVLEQLRANGLRIALDDYGTGFSGLKNLKKLPIYAIKIDRSFVR 567 Query: 624 DIARDADSAAIVKAVISLAHILNLRVIAEGVEDEQQHAFLKENACDEVQGYYFGKPMAVE 683 DI D A IV + ISLAH L L+V+AEGVE ++Q LK CD+VQG+YF +P+A Sbjct: 568 DIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGFYFKRPVAAA 627 Query: 684 DFTAWMSR 691 + R Sbjct: 628 GIVEILRR 635 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,627,501 Number of extensions: 67240 Number of successful extensions: 299 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 229 Number of HSP's successfully gapped: 35 Length of query: 702 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 612 Effective length of database: 888,291 Effective search space: 543634092 Effective search space used: 543634092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)